View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_96 (Length: 256)
Name: NF20869_low_96
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_96 |
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| [»] chr8 (7 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 1963087 - 1962845
Alignment:
| Q |
14 |
catcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1963087 |
catcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgg |
1962988 |
T |
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| Q |
114 |
gacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagtatgaagacaaagaggtg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962987 |
gacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagtatgaagacaaagaggtg |
1962888 |
T |
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| Q |
214 |
acagaagcagggtagtaaacataggacaacaagttgaattcct |
256 |
Q |
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| T |
1962887 |
acagaagcagggtagtaaacataggacaacaagttgaattcct |
1962845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 2015342 - 2015584
Alignment:
| Q |
14 |
catcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgg |
113 |
Q |
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||||||||||||| ||||||||||||| |||||| ||| | |||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||| |
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| T |
2015342 |
catcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactggatctatcttgagctagctcaaaaagatcccgaccatgaatcgg |
2015441 |
T |
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| Q |
114 |
gacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagtatgaagacaaagaggtg |
213 |
Q |
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| T |
2015442 |
aacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttatctaacttgagcaaatagaagtatgaagacaaactggtg |
2015541 |
T |
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| Q |
214 |
acagaagcagggtagtaaacataggacaacaagttgaattcct |
256 |
Q |
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| T |
2015542 |
gctgaagcagggtagtaaacataggacaacaagttgaattcct |
2015584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 2018725 - 2018962
Alignment:
| Q |
14 |
catcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgg |
113 |
Q |
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| T |
2018725 |
catcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctatcttgagcttggtcaacaagatcctgaccatgaattgg |
2018824 |
T |
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| Q |
114 |
gacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagtatgaagacaaagaggtg |
213 |
Q |
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||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| |||||||||||||| |||||||||||||||| |||| |
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| T |
2018825 |
tacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttattcaacttgagcaaatagaagtatgaagacaaactggtg |
2018924 |
T |
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| Q |
214 |
acagaagcagggtagtaaacataggacaacaagttgaa |
251 |
Q |
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|| |||| ||| |||||||||||||||||| |||||| |
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| T |
2018925 |
actgaagaaggaaagtaaacataggacaacatgttgaa |
2018962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 2008369 - 2008509
Alignment:
| Q |
55 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
153 |
Q |
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||||||| ||||||||||||||||||||||| | |||||||| |||| ||||| | || |||||||||||||||| ||||||||| | | |||||| |
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| T |
2008369 |
ttgtaagcttgacttgatctatcttgagctatgctcaagaaa-tccctgccatggagtggtacacaacctggtatttttataggctctagtatatctcta |
2008467 |
T |
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| Q |
154 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
195 |
Q |
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| T |
2008468 |
tactcacatgatgtttcctcatccagcttaggcaaatagaag |
2008509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 1968638 - 1968523
Alignment:
| Q |
63 |
ttgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcaca |
161 |
Q |
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| T |
1968638 |
ttgacttgatctatcttgagctacgctcaagaga-tccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcaca |
1968540 |
T |
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| Q |
162 |
tgaagtttccttatcca |
178 |
Q |
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| T |
1968539 |
tgatgtttcctcatcca |
1968523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 2011984 - 2012124
Alignment:
| Q |
55 |
ttgtaagattgacttgatctatcttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
153 |
Q |
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||||||| ||||||||||||||||||| ||| |||||||| | |||| ||||| | || || || || |||| || ||||||||||| ||||||||| |
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| T |
2011984 |
ttgtaagcttgacttgatctatcttgaactatggtcaagaga-tccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctg |
2012082 |
T |
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| Q |
154 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
195 |
Q |
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| T |
2012083 |
tactcacatgttgtttcctcatccaacttaggcaaatagaag |
2012124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
55 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
153 |
Q |
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||||||| ||||||||| |||||||||| | || ||| || | |||| ||||| || || |||||||||||||||| |||||| |||| | ||||| |
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| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca |
2005087 |
T |
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| Q |
154 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
195 |
Q |
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| T |
2005088 |
tactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 42 - 256
Target Start/End: Complemental strand, 5902238 - 5902024
Alignment:
| Q |
42 |
ttggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctct |
141 |
Q |
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|||||| ||||| ||||||||||| || ||||||||||||||| || ||| | |||||||||| |||| || |||||||||||| ||||||||| ||| |
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| T |
5902238 |
ttggagtaagaatttgtaagattggctcgatctatcttgagcttgggcaacgagatcccgaccacgaattggtacacaacctggtgcttgaataggttct |
5902139 |
T |
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| Q |
142 |
ggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggaca |
241 |
Q |
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| T |
5902138 |
ggcagatctctgtactcacatgatgtttccttatccaatttgagcaaatagaagtagaaagacaaagtggtggctgcaggagggaagtaaacataggaca |
5902039 |
T |
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| Q |
242 |
acaagttgaattcct |
256 |
Q |
| |
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||| |||||| |||| |
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| T |
5902038 |
acatgttgaactcct |
5902024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
134 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
195 |
Q |
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|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
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| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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