View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_97 (Length: 256)
Name: NF20869_low_97
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 33071302 - 33071461
Alignment:
| Q |
14 |
agaacaaaggtatttgatggatgacataggagagacttgcttgctttaaaatgaaatgagggatgagtttttgagatttgaaaatgtttaatcaagtcat |
113 |
Q |
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| T |
33071302 |
agaacaaaggtatttgatggatgacataggagagacttgcttgctttaaaatgaaatgagggatgagtttttgagatttgaaaatgtttaatcaagtcat |
33071401 |
T |
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| Q |
114 |
gttagcaaagaaaggatggaatatcataatgaaaccggagtggttggtactaatgtcatc |
173 |
Q |
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| T |
33071402 |
gttagcaaagaaatgatggaatatcataatgaaaccggagtggttggtactaatgtcatc |
33071461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 33071810 - 33071901
Alignment:
| Q |
165 |
aatgtcatccaaacagtaatgtttatacctttatttagagataacaaacgtgatgcattaatttggaatgacgaaaataatgacatgtatat |
256 |
Q |
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| T |
33071810 |
aatgtcatccaaacagtaatgtttatacctttatttagagataacaaacgtgatgcattaatttggaatgacgaaaataatgacatgtatat |
33071901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 22771737 - 22771885
Alignment:
| Q |
17 |
acaaaggtatttgatggatgacataggagagacttgcttgctttaaaatgaaatgagggatgagtttttgagatttgaaaatgtttaatcaagtcatgtt |
116 |
Q |
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| T |
22771737 |
acaaaggtattagatagatgacatgggagagacttgcttgctccaaaataaaatgagggatgagttttaga-atttgaaaatgtttaataaagtcatgtt |
22771835 |
T |
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| Q |
117 |
ag-caaagaaagga---tggaatatcataatgaaaccggagtggttggta |
162 |
Q |
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| T |
22771836 |
agccaaaaaaatgatattggaatatcataatgaaacgggagtggttggta |
22771885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 22772114 - 22772167
Alignment:
| Q |
202 |
gagataacaaacgtgatgcattaatttggaatgacgaaaataatgacatgtata |
255 |
Q |
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| T |
22772114 |
gagataaccaacctgatgcattaatctggaatgacgaaaagaatgacatgtata |
22772167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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