View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_low_98 (Length: 252)

Name: NF20869_low_98
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_low_98
NF20869_low_98
[»] chr7 (5 HSPs)
chr7 (19-252)||(36887302-36887535)
chr7 (169-222)||(36598327-36598380)
chr7 (170-228)||(5276278-5276336)
chr7 (169-219)||(24909834-24909884)
chr7 (170-239)||(28165138-28165207)
[»] chr1 (4 HSPs)
chr1 (169-239)||(27807161-27807231)
chr1 (169-239)||(31517694-31517764)
chr1 (172-224)||(4481979-4482031)
chr1 (169-209)||(37842339-37842379)
[»] chr5 (3 HSPs)
chr5 (170-239)||(4619754-4619823)
chr5 (169-222)||(37611186-37611239)
chr5 (169-222)||(37787916-37787969)
[»] chr4 (4 HSPs)
chr4 (170-239)||(2996620-2996689)
chr4 (169-224)||(21043204-21043259)
chr4 (170-239)||(50742790-50742859)
chr4 (169-209)||(1137758-1137798)
[»] chr3 (5 HSPs)
chr3 (169-209)||(48048966-48049006)
chr3 (172-239)||(2304225-2304292)
chr3 (170-238)||(2175804-2175872)
chr3 (176-224)||(21574543-21574591)
chr3 (169-209)||(45541617-45541657)
[»] chr6 (2 HSPs)
chr6 (170-209)||(769185-769224)
chr6 (170-239)||(27595521-27595590)
[»] chr2 (3 HSPs)
chr2 (169-239)||(787378-787448)
chr2 (169-239)||(43456661-43456731)
chr2 (172-224)||(1494415-1494467)
[»] chr8 (1 HSPs)
chr8 (140-197)||(25097392-25097449)
[»] scaffold0608 (1 HSPs)
scaffold0608 (172-224)||(9606-9658)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 36887535 - 36887302
Alignment:
Q  19 gtgaggagtcttggacgggtgttgcttgttctgagtcgtcggttataagcatgtaatgtaccaacctcaatcatcatatttcttacttagacgttgtttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36887535 gtgaggagtcttggacgggtgttgcttgttctgagtcgtcggttataagcatgtaatgtaccaacctcaatcatcatatttcttacttagacattgtttt 36887436  T
Q  119 gataaacagcttaattaaggactgtttttatatgttatcctcaagagcttctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887435 gataaacagcttaattaaggactgtttttatatgttatcctcaagagcttctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctca 36887336  T
Q  219 aacagttttataagtgcttattataccagtaatt 252  Q
    ||||||||||||||||||||||||||||||||||    
T  36887335 aacagttttataagtgcttattataccagtaatt 36887302  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 36598380 - 36598327
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 222  Q
    |||||||||||||||||||||||||| ||||| || ||||| ||||||||||||    
T  36598380 ctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaaca 36598327  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 5276278 - 5276336
Alignment:
Q  170 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagtttta 228  Q
    |||||||| || ||||| ||||||| ||||| || ||||| ||||||||||||||||||    
T  5276278 tgaaaacaactaatgaagatgtcataagatgtttgcataagctctctcaaacagtttta 5276336  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 24909834 - 24909884
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaa 219  Q
    |||||||||||||||||||||||||| || || ||||||||  ||||||||    
T  24909834 ctgaaaacagcttatgaacatgtcattagttgatttcataagttctctcaa 24909884  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 28165138 - 28165207
Alignment:
Q  170 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    ||||||||||||||||||| ||| |||| || || ||||| || ||||||| ||| | ||||||||||||    
T  28165138 tgaaaacagcttatgaacaggtcttgagctgtttccataagctatctcaaagagtctcataagtgcttat 28165207  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 27807161 - 27807231
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    ||||| |||||||||||||| ||||| || || |||||||| |||||||||||||| ||| || |||||||    
T  27807161 ctgaagacagcttatgaacacgtcatcagctgctttcataagctctctcaaacagtcttacaaatgcttat 27807231  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 31517764 - 31517694
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    ||||||||||||||||||||||||||||| || ||| ||||  |||| |||||||| | | ||||||||||    
T  31517764 ctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttat 31517694  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 4481979 - 4482031
Alignment:
Q  172 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 224  Q
    |||||||||||||||||||| || || || ||||||||  |||||||||||||    
T  4481979 aaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 4482031  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 37842379 - 37842339
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataa 209  Q
    |||||||| ||||||||||||||||| ||||| ||||||||    
T  37842379 ctgaaaactgcttatgaacatgtcattagatgttttcataa 37842339  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 4619754 - 4619823
Alignment:
Q  170 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    ||||| ||||||||||||||||||| || || |||||||| ||||| |||||||| ||  ||||||||||    
T  4619754 tgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttat 4619823  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 37611239 - 37611186
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 222  Q
    |||||||||||||||||||||||||  || || |||||||| ||||||||||||    
T  37611239 ctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaaca 37611186  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 37787969 - 37787916
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 222  Q
    |||||||||||||||||||||||||  || || |||||||| ||||||||||||    
T  37787969 ctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaaca 37787916  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 2996620 - 2996689
Alignment:
Q  170 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    |||||| |||||||| ||||||||| || || |||||||| |||||||||||||| | | ||||||||||    
T  2996620 tgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttat 2996689  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 21043259 - 21043204
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 224  Q
    ||||||||||||||||||| |||||| || || || ||||||||||| ||||||||    
T  21043259 ctgaaaacagcttatgaacgtgtcataagctgtttccataacctctcccaaacagt 21043204  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 50742859 - 50742790
Alignment:
Q  170 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    |||||||||  ||||||||||||||||  || ||||||||  ||||||||||||| | | ||||||||||    
T  50742859 tgaaaacagggtatgaacatgtcatgaactgttttcataagttctctcaaacagtctaacaagtgcttat 50742790  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 1137758 - 1137798
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataa 209  Q
    ||||||||| |||||||||||||||| ||||| ||||||||    
T  1137758 ctgaaaacaacttatgaacatgtcataagatgttttcataa 1137798  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 48049006 - 48048966
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataa 209  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  48049006 ctgaaaacagcttatggacatgtcatgagttggtttcataa 48048966  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 2304292 - 2304225
Alignment:
Q  172 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    ||||||||||||||||||||||| || || ||||||||  ||||||||| ||||| | ||||| ||||    
T  2304292 aaaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttat 2304225  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 2175872 - 2175804
Alignment:
Q  170 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgctta 238  Q
    |||||||||||||  |||||||||| || || |||||||| || ||||||| ||| ||| |||||||||    
T  2175872 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 2175804  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 21574543 - 21574591
Alignment:
Q  176 cagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 224  Q
    ||||||||||||||||||| || || |||||||| ||||| ||||||||    
T  21574543 cagcttatgaacatgtcataagttgttttcataagctctcccaaacagt 21574591  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 45541617 - 45541657
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataa 209  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  45541617 ctgaaaacagcttatgaacatgtcataagctgttttcataa 45541657  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 769185 - 769224
Alignment:
Q  170 tgaaaacagcttatgaacatgtcatgagatggtttcataa 209  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  769185 tgaaaacagcttatgaacatgtcataagatgttttcataa 769224  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 27595590 - 27595521
Alignment:
Q  170 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    |||||| |||||||||||||||||| || || || |||||  |||| |||||||| | ||||||||||||    
T  27595590 tgaaaatagcttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttat 27595521  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 787378 - 787448
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    |||||||||||||||| ||||||||| || || ||||||||  |||| |||||||| | | ||||||||||    
T  787378 ctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttat 787448  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 43456731 - 43456661
Alignment:
Q  169 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 239  Q
    |||||||||| ||||| |||||||||||| || ||||| || |||| ||||||||| ||| ||||| ||||    
T  43456731 ctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttat 43456661  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 1494467 - 1494415
Alignment:
Q  172 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 224  Q
    ||||||| ||||| ||||||||| || || |||||||| ||||||||||||||    
T  1494467 aaaacagtttatggacatgtcataagctgttttcataagctctctcaaacagt 1494415  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 25097392 - 25097449
Alignment:
Q  140 ctgtttttatatgttatcctcaagagcttctgaaaacagcttatgaacatgtcatgag 197  Q
    ||||||| ||| | ||||||  ||||||| ||||||| ||||||||||||||||||||    
T  25097392 ctgttttcataagctatcctggagagcttatgaaaactgcttatgaacatgtcatgag 25097449  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 9658 - 9606
Alignment:
Q  172 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 224  Q
    |||||||||||||||||||| || || || ||||||||  |||||||||||||    
T  9658 aaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 9606  T

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