View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_high_1 (Length: 742)

Name: NF2086_high_1
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_high_1
NF2086_high_1
[»] chr5 (1 HSPs)
chr5 (1-729)||(6948158-6948888)
[»] chr4 (1 HSPs)
chr4 (20-53)||(28007928-28007961)


Alignment Details
Target: chr5 (Bit Score: 676; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 1 - 729
Target Start/End: Complemental strand, 6948888 - 6948158
Alignment:
Q  1 caaaactacggtggcattatgattttgtcaatctcatcgtcaatccaaacatacacataatggaactcgacaatatcaatgctttccctctgcatgttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948888 caaaactacggtggcattatgattttgtcaatctcatcgtcaatccaaacatacacataatggaactcgacaatatcaatgctttccctctgcatgttca 6948789  T
Q  101 tcaaaagcaaattactgctggctgcgggtcatcatcgattcaagaactttgagaatttgtattatctgcaaaaagcaacatcataattaatgtttaaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6948788 tcaaaagcaaattactgctggctgcgggtcatcatcgattcaagaactttgagaatttgtattatctgcaaaaagcaatatcataattaatgtttaaaca 6948689  T
Q  201 tataattttttaatcttttagaaaagataagactaaacaccaaggtttcgttgatccgagtcaaattagacctaaccaaaagatcaaattaaacaccgat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  6948688 tataattttttaatcttttagaaaagataagactaaacaccaaggtttcgttgatcctagtaaaattagacctaaccaaaagatcaaattaaacaccgat 6948589  T
Q  301 gtttcattgatccgagtaaaatttcgtctcaggtagtgactaattaccggcaaagtcggtgcacaactgttacaatacataaccaaaagattaagaaaaa 400  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948588 gtttcattgatccgagtaaaattttgtctcaggtagtgactaattaccggcaaagtcggtgcacaactgttacaatacataaccaaaagattaagaaaaa 6948489  T
Q  401 gaccaaattaaagaaattgtaccatgagagttattggatgttgatggttggtcagtggttgtggctgtgcgttgctgtgagggtataacaacgccaggcc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948488 gaccaaattaaagaaattgtaccatgagagttattggatgttgatggttggtcagtggttgtggctgtgcgttgctgtgagggtataacaacgccaggcc 6948389  T
Q  501 aggagcggcacatacagtgcattccttcatcaatacttctgtagagggtggtcaagtgtttaccacatcctccccatgtatatttcccacaggtagcaca 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948388 aggagcggcacatacagtgcattccttcatcaatacttctgtagagggtggtcaagtgtttaccacatcctccccatgtatatttcccacaggtagcaca 6948289  T
Q  601 ttccaacctataacaca--nnnnnnnngcaacccctcaattcagaattgagtattgttgatgttgtttcactcgtagcaatacgatctaactatcttgat 698  Q
    |||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948288 ttccaacctataacacattttttttttgcaacccctcaattcagaattgagtattgttgatgttgtttcactcgtagcaatacgatctaactatcttgat 6948189  T
Q  699 tttatagttacggggtaaatattatattcct 729  Q
    |||||||||| ||||||||||||||||||||    
T  6948188 tttatagttaaggggtaaatattatattcct 6948158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 28007928 - 28007961
Alignment:
Q  20 tgattttgtcaatctcatcgtcaatccaaacata 53  Q
    |||||||||||||||||||||||||| |||||||    
T  28007928 tgattttgtcaatctcatcgtcaatctaaacata 28007961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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