View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_high_14 (Length: 378)
Name: NF2086_high_14
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 45103778 - 45104134
Alignment:
| Q |
5 |
agaagatgcaagggaaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaag |
104 |
Q |
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| T |
45103778 |
agaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttacatattctggaag |
45103877 |
T |
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| Q |
105 |
cagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctct |
204 |
Q |
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| T |
45103878 |
cagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaaacttcatcttttatcaacaccatccactccaaggacattcattctctct |
45103977 |
T |
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| Q |
205 |
tttgataaatctaccataataccagctactactacaccagaatcagaagaagtgtcaagaccaaagagtataagtaataataataagaggagtttagaac |
304 |
Q |
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| T |
45103978 |
tttgataaatctaccataataccagctactactacaccagaatcagaagaagtaccaagaacaaagagtagaagtaataataataagaggagtttggaac |
45104077 |
T |
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| Q |
305 |
caaaagcaaaagctagtaaccaaactggaaagaagagtagaagtggttctcagtgtt |
361 |
Q |
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| T |
45104078 |
caaaagcaaaagctagtaaccaaactggaaagaagagtagaagtggttctcagtgtt |
45104134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 45130417 - 45130757
Alignment:
| Q |
15 |
agggaaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaagcagtttatca |
114 |
Q |
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| T |
45130417 |
agggcaatattgtcatcaaactagtgctgatgatgaagaagagttcttgagagacataatccttcagcaacctgttacatattctggaagta---tatca |
45130513 |
T |
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| Q |
115 |
tcttctagtgagatggacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaat |
214 |
Q |
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|| |||| ||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45130514 |
tcctctaatgagatggatggctcagattgctcaaagaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaat |
45130613 |
T |
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| Q |
215 |
ctaccataataccagctactactacaccagaatcagaagaagtgtcaagaccaaagagtataagtaataataataagaggagtttagaaccaaaagcaaa |
314 |
Q |
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| T |
45130614 |
ctaccataataccagctactactacaccagaatcagaagaagtgtcaataccaaagagtagaagtaataataataagaggagtttggaaccaaaagcaaa |
45130713 |
T |
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| Q |
315 |
agctagtaaccaaactggaaagaagagtagaagtggttctcagt |
358 |
Q |
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| T |
45130714 |
agctagtaaccaaactggaaagaagagtagaagtggttctcagt |
45130757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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