View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_high_18 (Length: 350)
Name: NF2086_high_18
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_high_18 |
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| [»] chr4 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 20761419 - 20761594
Alignment:
| Q |
17 |
agtaaattgtctcgaagatcaagaagctgcagcagtgcaagatttccaagttgacaagggattgctcctgaaatagaatttcctccaaggttaagatatt |
116 |
Q |
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||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
20761419 |
agtaaattgtctccgagatcaagaaactgcagttgtgcaagatttccaagttgataagggattgctcctgaaagagaatttcctccaaggttaagatact |
20761518 |
T |
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| Q |
117 |
gtagttttgctagatttccaagttcacaagggattgctcaaacaagattgtttccttcaatgttaagatacttgag |
192 |
Q |
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| T |
20761519 |
ctagttttgctagatttccaagttcacaagggatttctccaacaagattgtttccttcaatgttaagatacttgag |
20761594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 20735923 - 20735772
Alignment:
| Q |
17 |
agtaaattgtctcgaagatcaagaagctgcagcagtgcaagatttccaagttgacaagggattgctcctgaaatagaatttcctccaaggttaagatatt |
116 |
Q |
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| T |
20735923 |
agtaaattgtctccaagatcaagaaactgcagttgtgcaagatttccaagttgataagggattgctcctgaaagagaatttcctccaaggttaagatact |
20735824 |
T |
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| Q |
117 |
gtagttttgctagatttccaagttcacaagggattgctcaaacaagattgtt |
168 |
Q |
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| T |
20735823 |
gtagttttgctagatttccaagttcacaagggattactccaacaagattgtt |
20735772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 37075569 - 37075421
Alignment:
| Q |
192 |
gggtattggtttgatgagttctctttgtgcaaagagtactcatactcaattgtggag-gactgttttatcctggagacaatgaggcaagaaagaactgtt |
290 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||||| || | || | || ||||||||||||||||| | ||| ||||||| | |||| |
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| T |
37075569 |
gggtgttggtttggtgagttctctttgtgcatagagtactcatacttaagtttgtaatgaatgttttatcctggagacgacgagccaagaaatatatgtt |
37075470 |
T |
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| Q |
291 |
gcaccattaaggcagagctgcggaacgtcttaaagagagcgacttaatc |
339 |
Q |
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| T |
37075469 |
gcaccattcaggcagagccgcagaacgtcttaaagagagcgacataatc |
37075421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 350
Target Start/End: Original strand, 37411146 - 37411307
Alignment:
| Q |
191 |
agggtattggtttgatgagttctctttgtgcaaagagtactcatactcaa--ttgtggaggactgttttatcctggagacaatgaggcaagaaagaactg |
288 |
Q |
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| T |
37411146 |
agggtgttgttttggtgagttctctttgtgaagagagtactcatattttaagttttggaaggctgttttatcctggagacgatgaggtaagattgaactg |
37411245 |
T |
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| Q |
289 |
ttgcaccattaaggcagagctgcggaacgtcttaaagagagcgacttaatccgcaactcagc |
350 |
Q |
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| T |
37411246 |
ttgtgccttagaagcagagctgcgaatcgtcttaaaaaaagcgaactaatccgcaactcagc |
37411307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 188 - 350
Target Start/End: Complemental strand, 48517828 - 48517665
Alignment:
| Q |
188 |
ttgagggtattggtttgatgagttctctttgtgcaaagagtactcatactcaattgtgga-ggactgttttatcctggagacaatgaggcaagaaagaac |
286 |
Q |
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|||||||| |||||||| ||||| ||||||||||||||||| ||||||| || | || | || |||||||||||||| ||| | ||||||||||||| | |
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| T |
48517828 |
ttgagggtgttggtttggagagttttctttgtgcaaagagtagtcatacttaagtttgaaagggctgttttatcctggggacgacgaggcaagaaagatc |
48517729 |
T |
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| Q |
287 |
tgttgcaccattaaggcagagctgcggaacgtcttaaagagagcgacttaatccgcaactcagc |
350 |
Q |
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| T |
48517728 |
tgttgcacaattcaggcagagccgcagaacgtcttaaagagagcgacctagtccgcgactcagc |
48517665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 48514894 - 48514796
Alignment:
| Q |
252 |
tgttttatcctggagacaatgaggcaagaaagaactgttgcaccattaaggcagagctgcggaacgtcttaaagagagcgacttaatccgcaactcagc |
350 |
Q |
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| T |
48514894 |
tgtttcatcctggggacgacgaggcaagaaagatctattgtacaattcaggcagagccgcggaacgtcttaaagagagcgacctagtctgcgactcagc |
48514796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 12704765 - 12704849
Alignment:
| Q |
266 |
gacaatgaggcaagaaagaactgttgcaccattaaggcagagctgcggaacgtcttaaagagagcgacttaatccgcaactcagc |
350 |
Q |
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| T |
12704765 |
gacaacgaggcaagaaataaatgttgcaccattgaggcagagccgcaaaaggtcttaaagagagcgacctagtccgcgactcagc |
12704849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 16595996 - 16596032
Alignment:
| Q |
314 |
aacgtcttaaagagagcgacttaatccgcaactcagc |
350 |
Q |
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| T |
16595996 |
aacgtcttaaagagagcgacctaatccgcgactcagc |
16596032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 307
Target Start/End: Original strand, 24657366 - 24657486
Alignment:
| Q |
187 |
cttgagggtattggtttgatgagttctctttgtgcaaagagtactcatactcaattgtggaggactgttttatcctggagacaatgaggcaagaaagaac |
286 |
Q |
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|||| |||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| | | ||| ||||| ||||||||||| |
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| T |
24657366 |
cttgtgggtgttggtttgatgagttctctttgcacaaagagtgctcatactcaattgtggatgactgttttatcttagggacgatgagacaagaaagaac |
24657465 |
T |
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| Q |
287 |
tgttgcaccattaaggcagag |
307 |
Q |
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||||||| |||| || ||||| |
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| T |
24657466 |
tgttgcatcattgagacagag |
24657486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 7373886 - 7373843
Alignment:
| Q |
197 |
ttggtttgatgagttctctttgtgcaaagagtactcatactcaa |
240 |
Q |
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| T |
7373886 |
ttggtttgatgagttctctttgtgcaaagagtactcatagtcaa |
7373843 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 14918576 - 14918500
Alignment:
| Q |
254 |
ttttatcctggagacaatgaggcaagaaagaactgttgcaccattaaggcagagctgcggaacgtcttaaagagagcgac |
333 |
Q |
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| T |
14918576 |
ttttatcctgg-gactatgaggcaagaaagaaatgttgcaccattaagacagagtcgcggaacatc--aaagagagcgac |
14918500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 350
Target Start/End: Complemental strand, 33293760 - 33293609
Alignment:
| Q |
200 |
gtttgatgagttctctttgtgcaaagagtactcatactcaa-ttgtggaggactgttttatcctggagacaatgaggcaagaaagaactgttgcaccatt |
298 |
Q |
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||||| || |||||||||||||| |||||||||||| ||| || || | | ||||||||| ||||||| | ||||||||||||| ||||| || ||| |
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| T |
33293760 |
gtttgctgggttctctttgtgcagtgagtactcatacacaagttttgaaaggctgttttattatggagacgacgaggcaagaaagatatgttgtactatt |
33293661 |
T |
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| Q |
299 |
aaggcagagctgcggaacgtcttaaagagagcgacttaatccgcaactcagc |
350 |
Q |
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||||||||| |||||| | ||||| |||| ||| || || || ||||||| |
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| T |
33293660 |
caggcagagccacggaacatattaaaaagagtgacgtagtctgcgactcagc |
33293609 |
T |
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