View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_high_20 (Length: 342)
Name: NF2086_high_20
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 21123386 - 21123066
Alignment:
| Q |
16 |
catcttcacgctaccatgcatcagcaaacaagaatccagaagtttgtttatgcgtgcttggaacatgctcctccttaactgcaatgagtatgttcttcct |
115 |
Q |
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| T |
21123386 |
catcttcacgctaccatgcatcagcaaacgagaatccagaagtttgtttatgtgtgcttggaacatgctcctccttaactgcaatgagtatgttcttcct |
21123287 |
T |
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| Q |
116 |
acacctactccaatttcatacctcaacaaatcttctactgggatgtgatagtcttcaagaaacatacagcacatcagaaatatcagttctgctgctctat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
21123286 |
acacctactccaatttcatacctcaacaaatcttctactgggatgtgatagtcttcaagaaacatacagcacatcagaaatatctgttctgcttctctat |
21123187 |
T |
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| Q |
216 |
tttgtaaacactcatagctggacttgatacaatttaaagcatcgctctctcctccttcatgatcatcagatgcctttgaaaccatcaacttagataatgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21123186 |
tttgtaaacactcatagctggacttgatacaatttaaagcatcgctctctcctccttcatgatcatcagatgcctttgaaaccatcaacttagctaatgt |
21123087 |
T |
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| Q |
316 |
tgaattccactcagtattatc |
336 |
Q |
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| T |
21123086 |
tgaattccactcattattatc |
21123066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 21115935 - 21115804
Alignment:
| Q |
40 |
caaacaagaatccagaagtttgtttatgcgtgcttggaacatgctcctccttaactgcaatgagtatgttcttcctacacctactccaatttcatacctc |
139 |
Q |
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|||||||||||| | |||||||||||| |||||| | || ||||||| || |||| ||||| || || ||| | ||||| ||||| | || ||||| |
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| T |
21115935 |
caaacaagaatcgaagagtttgtttatgtctgcttgaatcaagctcctcattgactgtaatgataatttttctcccatacctagtccaaatgcaaacctc |
21115836 |
T |
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| Q |
140 |
aacaaatcttctactgggatgtgatagtcttc |
171 |
Q |
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| T |
21115835 |
atcaaatcttctgttgggatgtgatagtcttc |
21115804 |
T |
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