View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_high_22 (Length: 331)

Name: NF2086_high_22
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_high_22
NF2086_high_22
[»] chr2 (2 HSPs)
chr2 (16-208)||(40460327-40460519)
chr2 (222-322)||(40460547-40460644)
[»] chr7 (1 HSPs)
chr7 (162-202)||(36482700-36482740)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 40460327 - 40460519
Alignment:
Q  16 cagttattttactttgacaatcagaacttgaaagacagttcctagtgtatcttggtaacttttgtttgctgtagataaaaagaaaaattataatgtaatg 115  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40460327 cagtcattttactttgacaaccagaacttgaaagacagttcctagtgtatcttggtaacttttgtttgctgtagataaaaagaaaaattataatgtaatg 40460426  T
Q  116 ctttggaaatttgattgatttgtgagagtttatagttgacaccgtgaaaaaatcgaatacttttaaatgtgtttggatgttgttttatggtat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40460427 ctttggaaatttgattgatttgtgagagtttatagttgacaccgtgaaaaaatcgaatacttttaaatgtgtttggatgttgttttatggtat 40460519  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 222 - 322
Target Start/End: Original strand, 40460547 - 40460644
Alignment:
Q  222 tttatgggttaacttttgggattgttcttaaaattgtgtgtggaagaggagagtttgacttacttattagtatatcgtttacttaccagtattagtatta 321  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  40460547 tttatgggttaacttttgggattgttcttaaaattttgtgtggaagaggagagtttgacttac---ttagtatatcgtttacttaccagtattagtatta 40460643  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 36482740 - 36482700
Alignment:
Q  162 aaaaaatcgaatacttttaaatgtgtttggatgttgtttta 202  Q
    ||||||||||||| ||||  |||||||||||||||||||||    
T  36482740 aaaaaatcgaatatttttggatgtgtttggatgttgtttta 36482700  T

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