View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_high_29 (Length: 285)

Name: NF2086_high_29
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_high_29
NF2086_high_29
[»] chr4 (2 HSPs)
chr4 (77-270)||(4117301-4117494)
chr4 (13-72)||(4117211-4117270)
[»] chr5 (2 HSPs)
chr5 (77-270)||(21156590-21156783)
chr5 (13-70)||(21156503-21156560)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 77 - 270
Target Start/End: Original strand, 4117301 - 4117494
Alignment:
Q  77 gtctattttatttggtcttgcaaacacaaaaatggtggacaacgatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctac 176  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117301 gtctatttgatttggtcttgcaaacacaaaaatggtggacaacaatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctac 4117400  T
Q  177 agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacgactctctctttcc 270  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117401 agttatattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacgactctctctttcc 4117494  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 4117211 - 4117270
Alignment:
Q  13 cagatgaaaggtacagggggcagatttgagcaaaattttgtgaagattagtgcattcaaa 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117211 cagatgaaaggtacagggggcagatttgagcaaaattttgtgaagattagtgcattcaaa 4117270  T

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Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 77 - 270
Target Start/End: Original strand, 21156590 - 21156783
Alignment:
Q  77 gtctattttatttggtcttgcaaacacaaaaatggtggacaacgatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctac 176  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21156590 gtctatttgatttggtcttgcaaacacaaaaatggtggacaacaatgagttataacaagtaatatgatttaaacaaaacacaaagcatagcaggtgctac 21156689  T
Q  177 agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacgactctctctttcc 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21156690 agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcactttcgactctctctttcc 21156783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 21156503 - 21156560
Alignment:
Q  13 cagatgaaaggtacagggggcagatttgagcaaaattttgtgaagattagtgcattca 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21156503 cagatgaaaggtacagggggcagatttgagcaaaattttgtgaagattagtgcattca 21156560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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