View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_high_34 (Length: 274)
Name: NF2086_high_34
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 55114818 - 55115021
Alignment:
| Q |
9 |
cattatactatacagctttcacaatagtagtcgaaaaaactatattcaattaacttttcattttcaaataattttctctgggttattctcttggaatatt |
108 |
Q |
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| T |
55114818 |
cattatactatacaactttcacaatagtagtcgaaaaaactatattcaattaacttttcattttcaaataattttctctgggttattctcttggaatatt |
55114917 |
T |
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| Q |
109 |
gagacatcgctggagtgaaattgttttgagagattgttaaccgagataaagattttatcgcgaggtcaatcatgaagacagttgtcagggttgttgaatg |
208 |
Q |
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| T |
55114918 |
gagacatcgctggaatgaaattgttttgagagattgttaaccgagataaagattttatcgcgaggtcaatcatgaagacagttgttagggttgttgaata |
55115017 |
T |
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| Q |
209 |
aatg |
212 |
Q |
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|||| |
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| T |
55115018 |
aatg |
55115021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 55115045 - 55115089
Alignment:
| Q |
214 |
ttttagaatgagtttcttctgattcattcatgtatgagtatcacc |
258 |
Q |
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| T |
55115045 |
ttttagaatgagtttcttctgattcatttatgtatgagtatcacc |
55115089 |
T |
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