View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_high_40 (Length: 240)
Name: NF2086_high_40
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 13555730 - 13555829
Alignment:
| Q |
126 |
tattgaattgatttgtaggcatttctaaaagcatggagtagtacttgtggagcagtaggaggtatggcaacactagttatacctaaaaataaatcatttt |
225 |
Q |
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| T |
13555730 |
tattgaattgatttgtaggcatttctaaaagcatggagtagtacttgtggagcaggaggtatattggcaacactagttatacctaaaaataaatcatttt |
13555829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 32469680 - 32469762
Alignment:
| Q |
34 |
ttttgatcgtggcctctctttat-acatcttgtgcggggatcggcggcgttgttgttaatatatatatcattttggtttgtgc |
115 |
Q |
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| T |
32469680 |
ttttgatcgtggtctctctctagcacaccttgtacggggattggcggcgtggttgtttatatatatatcattttggtttgtgc |
32469762 |
T |
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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13164645 - 13164611
Alignment:
| Q |
1 |
ttttctattgtccttttaatttaatatctatgttt |
35 |
Q |
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| T |
13164645 |
ttttctattgtccttttaatttaatatctatgttt |
13164611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 35738609 - 35738527
Alignment:
| Q |
34 |
ttttgatcgtggcctctctttat-acatcttgtgcggggatcggcggcgttgttgttaatatatatatcattttggtttgtgc |
115 |
Q |
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| T |
35738609 |
tttttatcgtggcctctctttagcacaccttgtgcggggattggcggcgttgttgttaatatatacatcattttggtttgtgc |
35738527 |
T |
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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 9372165 - 9372083
Alignment:
| Q |
34 |
ttttgatcgtggcctctctttat-acatcttgtgcggggatcggcggcgttgttgttaatatatatatcattttggtttgtgc |
115 |
Q |
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| T |
9372165 |
ttttgatcgtagcctctctttagcacaccttgtgcggggattggcgttgttgttgttaatatatatatcattttggtttgtgc |
9372083 |
T |
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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 26247162 - 26247244
Alignment:
| Q |
34 |
ttttgatcgtggcctctctttat-acatcttgtgcggggatcggcggcgttgttgttaatatatatatcattttggtttgtgc |
115 |
Q |
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| T |
26247162 |
ttttgatcgtggtctctctctagcacaccttgtgcggggattggcggcgtggttgtttatatatatatcattttggtttgtgc |
26247244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 45716681 - 45716599
Alignment:
| Q |
34 |
ttttgatcgtggcctctctttat-acatcttgtgcggggatcggcggcgttgttgttaatatatatatcattttggtttgtgc |
115 |
Q |
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| T |
45716681 |
ttttgatcgtggtctctctctagcacaccttgtgcggggattggcggcgtggttgtttatatatatatcattttggtttgtgc |
45716599 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 14977306 - 14977388
Alignment:
| Q |
34 |
ttttgatcgtggcctctctttat-acatcttgtgcggggatcggcggcgttgttgttaatatatatatcattttggtttgtgc |
115 |
Q |
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| T |
14977306 |
ttttgatcgtggtctctctctagcacaccttgtgcggggattggcggtgtggttgtttttatatatatcattttggtttgtgc |
14977388 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 21426293 - 21426226
Alignment:
| Q |
34 |
ttttgatcgtggcctctctttat-acatcttgtgcggggatcggcggcgttgttgttaatatatatat |
100 |
Q |
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| T |
21426293 |
ttttgatcgtggtctctctctagcacaccttgtgcggggattggcggcgtggttgtttatatatatat |
21426226 |
T |
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