View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2086_high_41 (Length: 237)
Name: NF2086_high_41
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_high_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4401474 - 4401692
Alignment:
| Q |
1 |
cctctccgtgggacatgagagaagacaaattgcatgatgatattgcaacacaaacactctttcacattttctctctttctttgtcactctcctacgttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4401474 |
cctctccgtgggacatgagagaagacaaattgcatgatgatattgcaacacaaacactctttcacattttctctctttctttgtcactctcctacgttaa |
4401573 |
T |
|
| Q |
101 |
taaaagttagatttccttcttgatttttggggaaaatcacctaatacagccttcaatggctcaatccttttctttgtagatttacttgataaccttccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4401574 |
taaaagttagatttccttcttgatttttggggaaaatcacctaatacagccttcaatggctcaatccttttctttgtagatttacttgataaccttccaa |
4401673 |
T |
|
| Q |
201 |
ctaatttatgtctacctat |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4401674 |
ctaatttatgtctacctat |
4401692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University