View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_high_45 (Length: 231)

Name: NF2086_high_45
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_high_45
NF2086_high_45
[»] chr6 (7 HSPs)
chr6 (1-215)||(31265596-31265810)
chr6 (1-91)||(3604676-3604767)
chr6 (7-91)||(30064031-30064116)
chr6 (120-189)||(22045162-22045231)
chr6 (46-91)||(7359183-7359228)
chr6 (45-86)||(34915923-34915964)
chr6 (7-72)||(9755229-9755294)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-86)||(230202-230287)
[»] chr4 (20 HSPs)
chr4 (1-91)||(18849835-18849926)
chr4 (44-91)||(33047438-33047485)
chr4 (44-91)||(49812169-49812216)
chr4 (1-89)||(31862736-31862825)
chr4 (7-90)||(3685952-3686036)
chr4 (44-91)||(8294971-8295018)
chr4 (9-91)||(48740460-48740543)
chr4 (46-91)||(29644295-29644340)
chr4 (46-86)||(28974252-28974292)
chr4 (7-81)||(35909950-35910023)
chr4 (7-91)||(42185878-42185963)
chr4 (44-91)||(1796551-1796598)
chr4 (44-91)||(47787967-47788014)
chr4 (44-90)||(1825368-1825414)
chr4 (7-73)||(32559121-32559188)
chr4 (7-85)||(42670452-42670531)
chr4 (2-85)||(48400708-48400791)
chr4 (44-89)||(8065489-8065534)
chr4 (44-85)||(34791072-34791113)
chr4 (44-88)||(40881313-40881357)
[»] chr7 (18 HSPs)
chr7 (1-91)||(12308319-12308409)
chr7 (1-89)||(38181950-38182039)
chr7 (1-87)||(33774119-33774204)
chr7 (7-91)||(34963893-34963978)
chr7 (44-91)||(48981319-48981366)
chr7 (44-91)||(7425999-7426046)
chr7 (44-91)||(11616501-11616548)
chr7 (44-91)||(40590945-40590992)
chr7 (7-85)||(31581525-31581604)
chr7 (1-91)||(46288507-46288598)
chr7 (44-85)||(37491026-37491067)
chr7 (48-87)||(34001968-34002007)
chr7 (7-87)||(36117606-36117686)
chr7 (7-91)||(45890919-45891003)
chr7 (44-87)||(46095568-46095611)
chr7 (44-86)||(7456707-7456749)
chr7 (46-91)||(5724829-5724874)
chr7 (51-91)||(49100921-49100961)
[»] chr5 (18 HSPs)
chr5 (7-91)||(3725127-3725211)
chr5 (1-87)||(8692895-8692982)
chr5 (7-91)||(11099560-11099645)
chr5 (7-91)||(39008069-39008154)
chr5 (7-87)||(41184061-41184142)
chr5 (7-86)||(13716955-13717035)
chr5 (44-91)||(15814603-15814650)
chr5 (44-90)||(6610776-6610822)
chr5 (44-90)||(7276324-7276370)
chr5 (1-91)||(42575715-42575806)
chr5 (44-85)||(4412329-4412370)
chr5 (46-91)||(41686614-41686659)
chr5 (1-91)||(8369773-8369865)
chr5 (44-91)||(4044597-4044644)
chr5 (2-31)||(10044669-10044698)
chr5 (44-73)||(10649995-10650024)
chr5 (44-85)||(13422472-13422513)
chr5 (44-85)||(25814310-25814351)
[»] chr3 (17 HSPs)
chr3 (7-90)||(48744166-48744250)
chr3 (1-84)||(21296579-21296663)
chr3 (44-91)||(54458430-54458477)
chr3 (1-91)||(21585486-21585577)
chr3 (44-90)||(43640685-43640731)
chr3 (7-90)||(32023183-32023267)
chr3 (1-91)||(54122300-54122390)
chr3 (47-91)||(33994597-33994641)
chr3 (44-84)||(49003217-49003257)
chr3 (44-91)||(9017739-9017786)
chr3 (44-91)||(39365137-39365184)
chr3 (44-91)||(41031512-41031559)
chr3 (44-82)||(26142855-26142893)
chr3 (6-85)||(54021539-54021618)
chr3 (6-75)||(51164908-51164978)
chr3 (44-85)||(54845638-54845679)
chr3 (44-72)||(26479950-26479978)
[»] chr2 (16 HSPs)
chr2 (7-91)||(43077808-43077892)
chr2 (9-91)||(14284358-14284440)
chr2 (1-91)||(28572151-28572239)
chr2 (44-91)||(565037-565084)
chr2 (1-91)||(3100340-3100431)
chr2 (2-91)||(7213415-7213505)
chr2 (6-84)||(33880106-33880184)
chr2 (44-91)||(13375594-13375641)
chr2 (7-86)||(41436024-41436104)
chr2 (44-91)||(44534607-44534654)
chr2 (44-89)||(24451725-24451770)
chr2 (120-189)||(44355549-44355618)
chr2 (7-86)||(3123588-3123668)
chr2 (44-90)||(5212078-5212124)
chr2 (44-86)||(42881397-42881439)
chr2 (44-85)||(44194598-44194639)
[»] chr8 (21 HSPs)
chr8 (1-90)||(33190985-33191075)
chr8 (1-85)||(32241500-32241585)
chr8 (44-91)||(138973-139020)
chr8 (7-86)||(2349295-2349375)
chr8 (44-91)||(5391988-5392035)
chr8 (7-86)||(12653632-12653712)
chr8 (44-87)||(29615742-29615785)
chr8 (44-91)||(39171483-39171530)
chr8 (44-85)||(29730988-29731029)
chr8 (120-189)||(31396108-31396177)
chr8 (44-91)||(34133021-34133068)
chr8 (7-86)||(34133072-34133152)
chr8 (120-190)||(2502227-2502297)
chr8 (44-86)||(9014545-9014587)
chr8 (1-31)||(14117463-14117493)
chr8 (7-85)||(44615447-44615526)
chr8 (44-81)||(138809-138846)
chr8 (44-85)||(26570279-26570320)
chr8 (44-85)||(31410728-31410769)
chr8 (46-87)||(34287201-34287242)
chr8 (44-72)||(14748827-14748855)
[»] chr1 (18 HSPs)
chr1 (120-189)||(12781031-12781100)
chr1 (44-89)||(19533040-19533085)
chr1 (9-90)||(7785359-7785440)
chr1 (1-91)||(52432252-52432343)
chr1 (1-91)||(2219525-2219615)
chr1 (7-91)||(27698752-27698837)
chr1 (44-84)||(48242711-48242751)
chr1 (44-91)||(46536280-46536327)
chr1 (44-86)||(36784259-36784301)
chr1 (44-85)||(34877210-34877251)
chr1 (44-85)||(52830534-52830575)
chr1 (44-91)||(11425990-11426037)
chr1 (44-91)||(17342768-17342815)
chr1 (44-91)||(43895787-43895834)
chr1 (7-75)||(49494246-49494314)
chr1 (44-86)||(36467316-36467358)
chr1 (44-85)||(16040023-16040064)
chr1 (45-85)||(37495772-37495812)
[»] scaffold0321 (1 HSPs)
scaffold0321 (7-89)||(9631-9714)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 31265810 - 31265596
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggacannnnnnnnc 100  Q
    ||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||| ||||||||||||||||||| |||         |    
T  31265810 aagttgtgaaagtaatattaattagagttataaaggaaaaaaataattaatattgtattgaaaagtgaaatgactaagttattttgagactttttttttc 31265711  T
Q  101 tgcaaatgaagtaattcaatattgaggtttcatagtttaagttttcacctataattatgttaattttatctatttaatgtgataagttgactgaaaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31265710 tgcaaatgaagtaattcaatattgaggtttcatagtttaagttttcacctataattatgttaattttatctatttaatgtgataaattgactgaaaaatt 31265611  T
Q  201 ggtccaatagaagaa 215  Q
    |||||||||||||||    
T  31265610 ggtccaatagaagaa 31265596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3604676 - 3604767
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  3604676 aagttgtgaaagtaatattaattagagttataaagggaaaaaaataattaatattgtattgaaaagtgaaatgactcagttattttaggaca 3604767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 30064031 - 30064116
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||| ||||        ||||||||||||||||| ||||| |||||||| ||||||||| |||||    
T  30064031 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatattgtattggaaagtgaaatgactcagttattttaggaca 30064116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 22045162 - 22045231
Alignment:
Q  120 tattgaggtttcatagtttaagttttcacctataattatgttaattttatctatttaatgtgataagttg 189  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||||||| |  ||||||||||||| |||||    
T  22045162 tattgtggttttatagtttaaattttcacatacaattatgttaatttaacttatttaatgtgattagttg 22045231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 7359228 - 7359183
Alignment:
Q  46 attaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||| |||||  | |||||||||||||||    
T  7359228 attaatattgtattgaaaagtgaaatggttcagttattttgggaca 7359183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 34915923 - 34915964
Alignment:
Q  45 aattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    |||||||||| ||||||||||| |||||||| ||||||||||    
T  34915923 aattaatattttattgaaaagtgaaatgactcagttattttg 34915964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 9755229 - 9755294
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatg 72  Q
    ||||| |||||||||||| |||||| ||||       ||||||||||||||||||||||| |||||    
T  9755229 tgaaaataatattaattacagttataaaggaaaaaagtaattaatattgtattgaaaagtgaaatg 9755294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 230287 - 230202
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||||||||||||||||||||||||||||| || |       ||||||||||||||||||||||| |||||||| ||||||||||    
T  230287 aagttgtgaaagtaatattaattagagttataaaagaaaaaaataattaatattgtattgaaaagtgaaatgactcagttattttg 230202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 18849835 - 18849926
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||||||||| ||||        ||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  18849835 aagttgtgaaagtaatattaattagagttataaagggaaaaaagtaattaatattttattgaaaagtgaaatgactcagttattttgggaca 18849926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 33047485 - 33047438
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  33047485 taattaatattgtattgaaaagtgaaatgactcagttattttgggaca 33047438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 49812216 - 49812169
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  49812216 taattaatattgtattgaaaagtgaaatgactcagttattttgggaca 49812169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31862825 - 31862736
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttggga 89  Q
    |||||||||||||| |||||||||||||||| ||||        |||||||||| |||||||||||| ||||||||  ||||||||||||    
T  31862825 aagttgtgaaagtagtattaattagagttataaagggaaaaaaataattaatatcgtattgaaaagtgaaatgactcggttattttggga 31862736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 3686036 - 3685952
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    ||||||||||||||||||||||||| ||||        ||||||||||||||||| ||||| |||||||| ||||||||| ||||    
T  3686036 tgaaagtaatattaattagagttataaaggggaaaaaataattaatattgtattggaaagtgaaatgactcagttattttaggac 3685952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 8295018 - 8294971
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  8295018 taattaatattgtattgaaaagtgaaatgactcggttattttgggaca 8294971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 48740543 - 48740460
Alignment:
Q  9 aaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| ||||        ||||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  48740543 aaagtaatattaattagagttataaagggaaaaaagtaattaatattgttttgaaaagtgaaatgactcagttattttgagaca 48740460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 29644340 - 29644295
Alignment:
Q  46 attaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||    
T  29644340 attaatattgtattgaaaagtgaaatgtctcagttattttgggaca 29644295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 28974292 - 28974252
Alignment:
Q  46 attaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  28974292 attaatattgtattgaaaagtgaaatgactcagttattttg 28974252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 35909950 - 35910023
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagtta 81  Q
    |||||||||||||||||||||| || ||||       |||||||||||||||||||||||||||| ||| |||||    
T  35909950 tgaaagtaatattaattagagtaataaaggaaaaaa-taattaatattgtattgaaaagtaaaataactcagtta 35910023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 42185878 - 42185963
Alignment:
Q  7 tgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||| |||||||||||||||| || ||       ||||||||  |||||||||||||||||||||| | |||||||||||||    
T  42185878 tgaaagtagtattaattagagttataaatggaaaaaagtaattaatgatgtattgaaaagtaaaatgactcacttattttgggaca 42185963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 1796551 - 1796598
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||| | |||||||  |||||||||||||||    
T  1796551 taattaatattgtattgaaaactgaaatgacccagttattttgggaca 1796598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 47787967 - 47788014
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| | |||||| | |||||||||||||    
T  47787967 taattaatattgtattgaaaagttatatgacttaattattttgggaca 47788014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 1825368 - 1825414
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    ||||||||||| ||||||||||| |||||||| ||||||||| ||||    
T  1825368 taattaatattatattgaaaagtgaaatgactcagttattttaggac 1825414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 32559188 - 32559121
Alignment:
Q  7 tgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatga 73  Q
    |||||||| |||||||||||||||| || ||       ||||||||||||||||||||||||||||||    
T  32559188 tgaaagtagtattaattagagttataaaagggagaaagtaattaatattgtattgaaaagtaaaatga 32559121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 42670452 - 42670531
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    |||||||||||||||||| |||||| ||||        |||||||||||||||||||| || ||||| ||||||||||||    
T  42670452 tgaaagtaatattaattaaagttataaaggaaaaaatgtaattaatattgtattgaaaggtgaaatggctaagttatttt 42670531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 48400708 - 48400791
Alignment:
Q  2 agttgtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    |||||||||||| ||||||||||||||  | || |       ||||||||||||||||||||||| |||||||| | |||||||    
T  48400708 agttgtgaaagtgatattaattagagtcgtaaaaggaaaaagtaattaatattgtattgaaaagtgaaatgactcaattatttt 48400791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 8065534 - 8065489
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttggga 89  Q
    |||||||||||||||||||||||  |||||||  ||||||||||||    
T  8065534 taattaatattgtattgaaaagtggaatgactcggttattttggga 8065489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 34791072 - 34791113
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    |||||||||||||||| ||||||||||||||| | |||||||    
T  34791072 taattaatattgtattaaaaagtaaaatgactcaattatttt 34791113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 40881313 - 40881357
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttggg 88  Q
    |||||| |||||||||||||||| ||||||||  |||||||||||    
T  40881313 taattactattgtattgaaaagtgaaatgactcggttattttggg 40881357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 12308409 - 12308319
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||||||||| || |       ||||||||||||||||||||| | |||||||| |||||||||| ||||    
T  12308409 aagttgtgaaagtaatattaattagagttataaatgaaaaaagtaattaatattgtattgaaaattgaaatgactcagttattttgagaca 12308319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 38181950 - 38182039
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaag-gnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttggga 89  Q
    |||||||||||||| |||||||||||||||| ||| |       ||||||||||| |||||||||||||||||||| |||||||||||||    
T  38181950 aagttgtgaaagtagtattaattagagttataaagagaaagaaataattaatattttattgaaaagtaaaatgactcagttattttggga 38182039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 33774119 - 33774204
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgg 87  Q
    |||||||||||||| ||||||||||| |||| ||||       ||||||||||||||||||||||| |||||||| |||||||||||    
T  33774119 aagttgtgaaagtagtattaattagaattataaaggaaaaaa-taattaatattgtattgaaaagtgaaatgactcagttattttgg 33774204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 34963893 - 34963978
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||| ||||        ||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  34963893 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatactgtattgaaaagtgaaatgactcagttattttgggaca 34963978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 48981366 - 48981319
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  48981366 taattaatattgtattgaaaagtgaaatgactcagttattttgggaca 48981319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 7425999 - 7426046
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||    
T  7425999 taattaatattgtattgaaaagtgaaatggctcagttattttgggaca 7426046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 11616548 - 11616501
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||    
T  11616548 taattaatattgtattgaaaagtgaaatggctcagttattttgggaca 11616501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 40590945 - 40590992
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||    
T  40590945 taattaatattgtatttaaaagtgaaatgactcagttattttgggaca 40590992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 31581525 - 31581604
Alignment:
Q  7 tgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    |||||||| |||||||||||||||| || ||       ||||||||||||||||||||||| |||||||| |||||||||    
T  31581525 tgaaagtagtattaattagagttataaatggaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttatttt 31581604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 46288507 - 46288598
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnnt-aattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||| |||||||| |||||||||||||||| ||||       | |||||||||| ||||||||||| ||||| || |||||||||||||||    
T  46288507 aagttatgaaagtagtattaattagagttataaagggaaaaaattaattaatattatattgaaaagtgaaatggctcagttattttgggaca 46288598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 37491026 - 37491067
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  37491026 taattaatattgtattgaaaagtaaaataactcagttatttt 37491067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 34001968 - 34002007
Alignment:
Q  48 taatattgtattgaaaagtaaaatgactaagttattttgg 87  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  34001968 taatattgtattgaaatgtgaaatgactaagttattttgg 34002007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 36117686 - 36117606
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgg 87  Q
    ||||||| |||||||||| |||||| ||||       ||||||||||||||||||||||| |||||||   ||||||||||    
T  36117686 tgaaagtgatattaattaaagttataaagggaaaaaataattaatattgtattgaaaagtgaaatgacacggttattttgg 36117606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 45890919 - 45891003
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||||||| |||||| ||||       |||||| |||||||||||||||| ||||  || |||||||||| ||||    
T  45890919 tgaaagtaatattaattatagttataaagggaaaaaataattattattgtattgaaaagtgaaattgctcagttattttgtgaca 45891003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 46095568 - 46095611
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgg 87  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||    
T  46095568 taattaatattgtattgaaaagtgaaatgactcggttattttgg 46095611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 7456707 - 7456749
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  7456707 taattaatattgtattgaaatgtgaaatgacttagttattttg 7456749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 5724829 - 5724874
Alignment:
Q  46 attaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||| ||||| || | |||||||||||||    
T  5724829 attaatattgtattgaaaagtgaaatggctcacttattttgggaca 5724874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 49100921 - 49100961
Alignment:
Q  51 tattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||| | |||||||| ||||    
T  49100921 tattgtattgaaaagtaaaatgactcaattattttgagaca 49100961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 3725211 - 3725127
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||| ||||        |||||||||||||||||||||| |||||||| ||||||||| |||||    
T  3725211 tgaaagtaatattaattagagttataaagggaaaaaaaaattaatattgtattgaaaagtgaaatgactcagttattttaggaca 3725127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8692895 - 8692982
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaagg-nnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgg 87  Q
    ||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||| | ||||||||  ||||||||||    
T  8692895 aagttgtgaaagtaatattaattagagttataaaggaaaaaaagtaattaatattgtattgaaaaatgaaatgactcggttattttgg 8692982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 11099560 - 11099645
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||| |||||||||||||||| ||||        ||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  11099560 tgaaagtagtattaattagagttataaaggggaaaaagtaattaatattgtattggaaagtgaaatgactcagttattttgggaca 11099645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 39008154 - 39008069
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||| |||||||||||||||| ||||        ||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  39008154 tgaaagtagtattaattagagttataaagggaaaaaaataattaatattgtattgaaaagtgaaatgacttagttattttaggaca 39008069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 41184142 - 41184061
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgg 87  Q
    ||||||||||||||||||||||||| || |        |||||||||||||||||||||||||||| ||| |||||||||||    
T  41184142 tgaaagtaatattaattagagttataaatgaaaaaatgtaattaatattgtattgaaaagtaaaatcactcagttattttgg 41184061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 13717035 - 13716955
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||| ||||||||||||||||||| ||||        ||||||||||||||||||||| |||||||||| ||||||||||    
T  13717035 tgaaaataatattaattagagttataaagggaaaaaagtaattaatattgtattgaaaaataaaatgactcagttattttg 13716955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 15814650 - 15814603
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  15814650 taattaatattgtattgaaaagtgaaatgactcagttattttgagaca 15814603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 6610822 - 6610776
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||    
T  6610822 taattaatattgtatttaaaagtgaaatgactcagttattttgggac 6610776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 7276370 - 7276324
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  7276370 taattaatattgtattgaaaagtaaaataactcagttattttaggac 7276324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 42575715 - 42575806
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||| ||||||||| |||||| ||||        ||||||||||||||||||||||| ||||| ||  ||||||||||||||    
T  42575715 aagttgtgaaagtagtattaattaaagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaatggctcggttattttgggaca 42575806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 4412370 - 4412329
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  4412370 taattaatattgtattgaaaagtgaaatgacttagttatttt 4412329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 41686614 - 41686659
Alignment:
Q  46 attaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||||    
T  41686614 attaaaattgtattgaaaagtgaaatgactcagttattttgggaca 41686659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 8369773 - 8369865
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnn--taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||| |||||||||||||||| || |         ||||||||||||||||||||| | ||||| || |||||||||||||||    
T  8369773 aagttgtgaaagtagtattaattagagttataaaagaaaaaaaaataattaatattgtattgaaaaatgaaatggctcagttattttgggaca 8369865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 4044597 - 4044644
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||| | | |||||||||||||    
T  4044597 taattaatattgtattgaaaagtgaaatgattcaattattttgggaca 4044644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 10044698 - 10044669
Alignment:
Q  2 agttgtgaaagtaatattaattagagttat 31  Q
    ||||||||||||||||||||||||||||||    
T  10044698 agttgtgaaagtaatattaattagagttat 10044669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 10650024 - 10649995
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatga 73  Q
    ||||||||||||||||||||||||||||||    
T  10650024 taattaatattgtattgaaaagtaaaatga 10649995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 13422472 - 13422513
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||||||||| |||||| | |||||||||    
T  13422472 taattaatattgtattgaaaagtgaaatgaatcagttatttt 13422513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 25814351 - 25814310
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||||||||| |||||| | |||||||||    
T  25814351 taattaatattgtattgaaaagtgaaatgattcagttatttt 25814310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 48744250 - 48744166
Alignment:
Q  7 tgaaagtaatattaattagagttatcaag-gnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    ||||||||||||||||||||||||| ||| |       |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  48744250 tgaaagtaatattaattagagttataaagagaaaaaagtaattaatattgtattaaaaagtaaaatgacttagttattttgggac 48744166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21296579 - 21296663
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattt 84  Q
    |||||||||||||| |||||||||||||||| || ||       ||||||||||||||||||||||| |||||||| ||||||||    
T  21296579 aagttgtgaaagtagtattaattagagttataaaaggaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattt 21296663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 54458430 - 54458477
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  54458430 taattaatattgtattgaaaagtaaaattactcagttattttgggaca 54458477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 21585486 - 21585577
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||| |||||||||||||||||||||||||| |  ||       ||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  21585486 aagtggtgaaagtaatattaattagagttataattgggaaaaaataattaatattgtattggaaagtgaaatgactcagttattttgggaca 21585577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 43640685 - 43640731
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  43640685 taattaatattgtattgaaaagtgaaatgactcagttattttgggac 43640731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 32023183 - 32023267
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    ||||||||||||||||||||||||| ||||        ||||||||||||||||| ||||| |||||||| ||||||||| ||||    
T  32023183 tgaaagtaatattaattagagttataaagggaaaaaaataattaatattgtattggaaagtgaaatgactcagttattttaggac 32023267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 54122300 - 54122390
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||| |||| ||||||||||| || ||       |||||||| || ||||||||||| ||||||||||||||||||||||||    
T  54122300 aagttgtgaaagtagtattgattagagttataaaaggaaaaaagtaattaat-ttatattgaaaagtgaaatgactaagttattttgggaca 54122390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 33994641 - 33994597
Alignment:
Q  47 ttaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||    
T  33994641 ttaatattgtattgaaaagtgaaatgactcagttatttttggaca 33994597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 49003257 - 49003217
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattt 84  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  49003257 taattaatattgtattgaaaagtaaaatgactcacttattt 49003217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 9017786 - 9017739
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| ||| |||| ||||||||| |||||    
T  9017786 taattaatattgtattgaaaagtgaaacgactcagttattttaggaca 9017739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 39365137 - 39365184
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||| | ||||| || |||||||||||||||    
T  39365137 taattaatattgtattgaaaattgaaatggctcagttattttgggaca 39365184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 41031559 - 41031512
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| | |||||||| ||||    
T  41031559 taattaatattgtattgaaaagtgaaatgactcaattattttgcgaca 41031512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 26142893 - 26142855
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttat 82  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  26142893 taattaatattatattgaaaagtaaaatgactcagttat 26142855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 54021539 - 54021618
Alignment:
Q  6 gtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||| ||||||||||| |||| ||||       ||||||||||| ||||||||||| |||||||| | |||||||    
T  54021539 gtgaaagtagtattaattagaattataaagggaaaaattaattaatattatattgaaaagtgaaatgacttaattatttt 54021618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 51164978 - 51164908
Alignment:
Q  6 gtgaaagtaata-ttaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgact 75  Q
    ||||||||| || |||||||||||||| ||||       ||||||||||||||||||||||| ||||||||    
T  51164978 gtgaaagtagtacttaattagagttataaagggaaaaagtaattaatattgtattgaaaagtgaaatgact 51164908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 54845638 - 54845679
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    |||||||||||||||| |||||| |||||||| |||||||||    
T  54845638 taattaatattgtattaaaaagtgaaatgacttagttatttt 54845679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 26479950 - 26479978
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatg 72  Q
    |||||||||||||||||||||||||||||    
T  26479950 taattaatattgtattgaaaagtaaaatg 26479978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 43077808 - 43077892
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||| || |       ||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  43077808 tgaaagtaatattaattagagttataaaaggaaaaaataattaatattgtattgaaaagtgaaatgactccgttattttgggaca 43077892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 14284358 - 14284440
Alignment:
Q  9 aaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||||| ||| || ||||       ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  14284358 aaagtaatattaattacagtcatgaagggaaaaaataattaatattgtattgaaaaataaaatgactcagttattttgggaca 14284440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28572239 - 28572151
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||| ||||||||| |||||| |||        ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  28572239 aagttgtgaaagtagtattaattacagttataaag--agaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgggaca 28572151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 565084 - 565037
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||    
T  565084 taattaatattgtattgaaaagtaaaatgatttagttattttgggaca 565037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3100431 - 3100340
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||| |||||||||||||||  ||||        ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  3100431 aagttgtgaaagtagtattaattagagttacaaagggaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgagaca 3100340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 7213505 - 7213415
Alignment:
Q  2 agttgtgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||| |||||||||||||||| || ||       ||||||||||||||||||||||| |||||| | | |||||||||||||    
T  7213505 agttgtgaaagtagtattaattagagttataaaagggaaaaagtaattaatattgtattgaaaagtgaaatgatttaattattttgggaca 7213415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 33880184 - 33880106
Alignment:
Q  6 gtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattt 84  Q
    |||||||||||||||||||||||||| ||||       |||||||||||||||| |||||| |||||||| | ||||||    
T  33880184 gtgaaagtaatattaattagagttataaagggaaaaagtaattaatattgtattaaaaagtgaaatgactcaattattt 33880106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 13375594 - 13375641
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  13375594 taattaatattgtattgaaaagtgaaatgactcagttattttgagaca 13375641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 41436104 - 41436024
Alignment:
Q  7 tgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    |||||||| |||||||||||||||| || ||       ||||||||||||||||||||||| |||||||| ||||||||||    
T  41436104 tgaaagtagtattaattagagttataaaagggaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttg 41436024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 44534607 - 44534654
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  44534607 taattaatattgtattgaaaagtgaaatgactcagttattttgagaca 44534654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 24451770 - 24451725
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttggga 89  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||    
T  24451770 taattaatattgtattggaaagtgaaatgacttagttattttggga 24451725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 44355549 - 44355618
Alignment:
Q  120 tattgaggtttcatagtttaagttttcacctataattatgttaattttatctatttaatgtgataagttg 189  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||||||| |  ||||||||||||| |||||    
T  44355549 tattgtggttttatagtttaaattttcacatacaattatgttaatttaacttatttaatgtgattagttg 44355618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 3123668 - 3123588
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||| ||||||||||||||||||| ||||        ||||||||||||||||| ||||| |||||||| ||||||||||    
T  3123668 tgaaaataatattaattagagttataaaggaaaaataataattaatattgtattggaaagtgaaatgactcagttattttg 3123588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 5212078 - 5212124
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    ||||||||||||||||||||||| |||| ||| ||||||||| ||||    
T  5212078 taattaatattgtattgaaaagtgaaataactcagttattttaggac 5212124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 42881397 - 42881439
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||||||||||||||||||||| |||||| | ||||||||||    
T  42881397 taattaatattgtattgaaaagtgaaatgattcagttattttg 42881439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 44194639 - 44194598
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||||||||| |||||| | |||||||||    
T  44194639 taattaatattgtattgaaaagtgaaatgattcagttatttt 44194598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 33190985 - 33191075
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    |||||||||||||| || ||||||||||||| ||||        ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  33190985 aagttgtgaaagtagtactaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgggac 33191075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 32241500 - 32241585
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||||||||||||||||| || ||       ||||||||||||||||||||||| |||| ||| | |||||||    
T  32241500 aagttgtgaaagtaatattaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaataactcatttatttt 32241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 139020 - 138973
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  139020 taattaatattgtattgaaaagtgaaatgactcggttattttgggaca 138973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 2349375 - 2349295
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||||||||||||||||||||||| || |        |||||||||||||||||||| || |||||||||||||||||||    
T  2349375 tgaaagtaatattaattagagttataaaagaaaaaaggtaattaatattgtattgaaacgtgaaatgactaagttattttg 2349295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 5392035 - 5391988
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  5392035 taattaatattgtattgaaaagtgaaatgactcagttattttgagaca 5391988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 12653712 - 12653632
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnntaatt-aatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    |||||||||||||||| |||||||| ||||       ||||| |||||||||||||||||| |||||||| ||||||||||    
T  12653712 tgaaagtaatattaatcagagttataaagggaaaaagtaattaaatattgtattgaaaagtgaaatgacttagttattttg 12653632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 29615785 - 29615742
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgg 87  Q
    |||||||||||||||||||||||||||||| | |||||||||||    
T  29615785 taattaatattgtattgaaaagtaaaatgattcagttattttgg 29615742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 39171530 - 39171483
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  39171530 taattaatattatattgaaaagttaaatgactcagttattttgggaca 39171483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 29730988 - 29731029
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  29730988 taattaatattgtattgaaaagtgaaatgactcagttatttt 29731029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 31396177 - 31396108
Alignment:
Q  120 tattgaggtttcatagtttaagttttcacctataattatgttaattttatctatttaatgtgataagttg 189  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||||||| |  ||||||||||||| |||||    
T  31396177 tattgtggttttatagtttaaattttcacatacaattatgttaatttaacttatttaatgtgattagttg 31396108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 34133068 - 34133021
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||||||||| ||||||  ||||||| |||||||||||||||    
T  34133068 taattaatattgtattaaaaagtgtaatgactcagttattttgggaca 34133021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 34133152 - 34133072
Alignment:
Q  7 tgaaagtaatattaattagagttatcaa-ggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||||||||||||||| ||||||| || ||       |||||||||||||||||||||||  ||||||| ||||||||||    
T  34133152 tgaaagtaatattaattggagttataaaaggaaaataataattaatattgtattgaaaagtgtaatgactcagttattttg 34133072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 2502297 - 2502227
Alignment:
Q  120 tattgaggtttcatagtttaagttttcacctataattatgttaattttatctatttaatgtgataagttga 190  Q
    ||||| ||||| ||||||||| ||||| | || |||||||||||||| |  ||||||||||||| ||||||    
T  2502297 tattgtggttttatagtttaaattttcgcatacaattatgttaatttaacttatttaatgtgattagttga 2502227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 9014587 - 9014545
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||    
T  9014587 taattaaaattgtattaaaaagtaaaatgactcagttattttg 9014545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 14117493 - 14117463
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttat 31  Q
    |||||||||||||||||||||||||||||||    
T  14117493 aagttgtgaaagtaatattaattagagttat 14117463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 44615447 - 44615526
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||| ||||||||||||||||||| ||||        ||||||||||||||||| ||||| |||||||| |||||||||    
T  44615447 tgaaaataatattaattagagttataaagggggaaaagtaattaatattgtattggaaagtgaaatgactcagttatttt 44615526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 138809 - 138846
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagtta 81  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  138809 taattaatattgtattgaaaagtgaaatgacttagtta 138846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 26570279 - 26570320
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||||||||| |||||| | |||||||||    
T  26570279 taattaatattgtattgaaaagtgaaatgaatcagttatttt 26570320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 31410728 - 31410769
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  31410728 taattaatattgtattggaaagtgaaatgactcagttatttt 31410769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 34287201 - 34287242
Alignment:
Q  46 attaatattgtattgaaaagtaaaatgactaagttattttgg 87  Q
    |||||| |||||||||||||| |||||||| |||||||||||    
T  34287201 attaatgttgtattgaaaagtgaaatgactcagttattttgg 34287242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 14748827 - 14748855
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatg 72  Q
    |||||||||||||||||||||||||||||    
T  14748827 taattaatattgtattgaaaagtaaaatg 14748855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 12781100 - 12781031
Alignment:
Q  120 tattgaggtttcatagtttaagttttcacctataattatgttaattttatctatttaatgtgataagttg 189  Q
    ||||||||||| |||||||||||||||||  ||||||| |||||||||||| ||||| |||||| |||||    
T  12781100 tattgaggttttatagtttaagttttcactcataattacgttaattttatcgatttattgtgattagttg 12781031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 19533040 - 19533085
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttggga 89  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  19533040 taattaatattgtattgaaaagtaaaatgactcagttattttggga 19533085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 7785359 - 7785440
Alignment:
Q  9 aaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggac 90  Q
    |||||| |||||||||||||||| ||||       ||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  7785359 aaagtagtattaattagagttataaagggaaaaaataattaatattgtattgaaaagtgaaatgactcagttattatgggac 7785440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 52432343 - 52432252
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||| ||||||||||||||| || |        |||||||||||||||||||||||||||||||  ||||||||| |||||    
T  52432343 aagttgtgaaagtaacattaattagagttataaaagaaaaaaagtaattaatattgtattgaaaagtaaaatgacctagttattttaggaca 52432252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2219525 - 2219615
Alignment:
Q  1 aagttgtgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    |||||||||| ||| |||||||||||||||| ||||       ||||||||||||||||||||||| |||||  | | |||||||||||||    
T  2219525 aagttgtgaacgtagtattaattagagttataaagggaaaaagtaattaatattgtattgaaaagtgaaatggttcaattattttgggaca 2219615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 27698837 - 27698752
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||||| ||||        ||||||||||||||||||||||| |||||||| | ||||||| |||||    
T  27698837 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaatgactcaattattttaggaca 27698752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 48242711 - 48242751
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattt 84  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  48242711 taattaatattgtattgaaaagtgaaatgactaagttattt 48242751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 46536327 - 46536280
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  46536327 taattaatattgtattgaaaagtgaaatgactcagttattttgagaca 46536280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 36784301 - 36784259
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  36784301 taattaatattgtattgaaaagtgaaatgactcagttattttg 36784259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 34877210 - 34877251
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  34877210 taattaatattgtattgaaaagtaaaatgattcagttatttt 34877251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 52830534 - 52830575
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  52830534 taattaatattgtattgaaaagtgaaatgactcagttatttt 52830575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 11425990 - 11426037
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||| ||||| |||||||| ||||||||| |||||    
T  11425990 taattaatattgtattggaaagtgaaatgactcagttattttaggaca 11426037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 17342815 - 17342768
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||| ||| |||||||||| ||||    
T  17342815 taattaatattgtattgaaaagtgaaataactcagttattttgagaca 17342768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 43895834 - 43895787
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttgggaca 91  Q
    ||||||||||||||||||||||| |||||||| | |||||||| ||||    
T  43895834 taattaatattgtattgaaaagtgaaatgactcatttattttgagaca 43895787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 49494246 - 49494314
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnntaattaatattgtattgaaaagtaaaatgact 75  Q
    |||||||||||||||||| |||||| ||||       ||||||||| ||||||||||||| ||||||||    
T  49494246 tgaaagtaatattaattaaagttataaaggaaaaaagtaattaatagtgtattgaaaagtgaaatgact 49494314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 36467316 - 36467358
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttattttg 86  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||    
T  36467316 taattaatattgtattgaaaagtgaaatgactcagtcattttg 36467358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 16040064 - 16040023
Alignment:
Q  44 taattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  16040064 taattaatattgtattggaaagtgaaatgactcagttatttt 16040023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 37495812 - 37495772
Alignment:
Q  45 aattaatattgtattgaaaagtaaaatgactaagttatttt 85  Q
    |||||||||||||| |||||||||||||||| | |||||||    
T  37495812 aattaatattgtatagaaaagtaaaatgactcaattatttt 37495772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 9631 - 9714
Alignment:
Q  7 tgaaagtaatattaattagagttatcaaggnnnnnnn-taattaatattgtattgaaaagtaaaatgactaagttattttggga 89  Q
    |||||||| |||||||||||||||| ||||        ||||||||||||||||||||||| |||| |||  ||||||||||||    
T  9631 tgaaagtagtattaattagagttataaagggaaaatagtaattaatattgtattgaaaagtgaaattactctgttattttggga 9714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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