View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_high_48 (Length: 219)

Name: NF2086_high_48
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_high_48
NF2086_high_48
[»] chr8 (1 HSPs)
chr8 (121-204)||(29778106-29778189)
[»] chr2 (1 HSPs)
chr2 (148-201)||(40299656-40299709)
[»] chr7 (2 HSPs)
chr7 (144-195)||(17270423-17270474)
chr7 (161-201)||(11372283-11372323)
[»] chr5 (2 HSPs)
chr5 (137-184)||(19169650-19169697)
chr5 (137-187)||(24923451-24923501)
[»] chr3 (1 HSPs)
chr3 (165-204)||(4155199-4155238)
[»] chr1 (1 HSPs)
chr1 (163-196)||(33162041-33162074)
[»] scaffold0983 (1 HSPs)
scaffold0983 (146-198)||(3137-3189)


Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 29778189 - 29778106
Alignment:
Q  121 atagttggttttatacaaattagcttaaaaaataattacaaatctcacaattcatattaactattattcaccaaactacatatt 204  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29778189 atagttggttttatacaaattagcttaaaaaatgattacaaatctcacgattcatattaactattattcaccaaactacatatt 29778106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 40299709 - 40299656
Alignment:
Q  148 aaaaataattacaaatctcacaattcatattaactattattcaccaaactacat 201  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  40299709 aaaaatagttaaaaatctcccaattcatattaactattactcaccaaactacat 40299656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 17270474 - 17270423
Alignment:
Q  144 cttaaaaaataattacaaatctcacaattcatattaactattattcaccaaa 195  Q
    ||||||||||  |||| ||| |||||||||||||||||||||| ||||||||    
T  17270474 cttaaaaaatgtttacgaatttcacaattcatattaactattactcaccaaa 17270423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 11372283 - 11372323
Alignment:
Q  161 aatctcacaattcatattaactattattcaccaaactacat 201  Q
    |||||||||||||||| |||||||||||| | |||||||||    
T  11372283 aatctcacaattcataataactattattcgctaaactacat 11372323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 19169697 - 19169650
Alignment:
Q  137 aaattagcttaaaaaataattacaaatctcacaattcatattaactat 184  Q
    ||||||| |||||||||  |||| ||||||||||||||||||||||||    
T  19169697 aaattagtttaaaaaatggttacgaatctcacaattcatattaactat 19169650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 24923501 - 24923451
Alignment:
Q  137 aaattagcttaaaaaataattacaaatctcacaattcatattaactattat 187  Q
    |||| |||||||||||||||||| ||||| |||||| || |||||||||||    
T  24923501 aaatcagcttaaaaaataattacgaatcttacaatttatgttaactattat 24923451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 4155199 - 4155238
Alignment:
Q  165 tcacaattcatattaactattattcaccaaactacatatt 204  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  4155199 tcacaattcatattaactattgttcaccaaattacatatt 4155238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 33162074 - 33162041
Alignment:
Q  163 tctcacaattcatattaactattattcaccaaac 196  Q
    |||||||||| |||||||||||||||||||||||    
T  33162074 tctcacaattgatattaactattattcaccaaac 33162041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 3137 - 3189
Alignment:
Q  146 taaaaaataattacaaatctcacaattcatattaactattattcaccaaacta 198  Q
    ||||||||  |||| | ||||| ||||||||||||||||||||||||| ||||    
T  3137 taaaaaatggttacgagtctcataattcatattaactattattcaccacacta 3189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University