View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_10 (Length: 468)
Name: NF2086_low_10
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 114 - 450
Target Start/End: Complemental strand, 4571090 - 4570758
Alignment:
| Q |
114 |
attagttggagtaactaactctaaccaaagctactaagtcgaatttacccatcaattacctacgatcaactatagcgtaatagtttgctttaaggcaccc |
213 |
Q |
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| T |
4571090 |
attagttgaagtaattaactctaaccaaagctactaagtcgagtttacccatcaattacctatgatgaactatagcataatagtttgctttaaggcaccc |
4570991 |
T |
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| Q |
214 |
gaaatgacgatttatctcaacaataattagctaccgtttgttgatctatggtaattaactattgattgcatatatacatatgaacaaaaatgacactcat |
313 |
Q |
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| T |
4570990 |
gaaatgacgctttacctcaacaatagttagctaccgttcgttggtctatggtaattaactatcgattgcatatatacatatgaacaaaaatgacactcat |
4570891 |
T |
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| Q |
314 |
acggtagtttagtaccgtagaaagatcttattggcttaattgaagaaaagagcctcgatctgttgaggttaattaaataaaatgtctgtttttatattag |
413 |
Q |
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| T |
4570890 |
acggtagtttagtaccgtagaaagatcttattggcttaattgaagaaaaaagc----atctgttgaggttaattaaataaaatgtctgtttttatattag |
4570795 |
T |
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| Q |
414 |
gtaaagaatttctattcgaaagtcaactgtcaaggtt |
450 |
Q |
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| T |
4570794 |
gtaaagaatttctattcgaaagtcaactgtcaaggtt |
4570758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 4571192 - 4571162
Alignment:
| Q |
12 |
aagcataggaccgatcatgagggagatacaa |
42 |
Q |
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| T |
4571192 |
aagcataggaccgatcatgagggagatacaa |
4571162 |
T |
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