View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2086_low_11 (Length: 461)
Name: NF2086_low_11
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 2262073 - 2261636
Alignment:
| Q |
8 |
attatactcttaaataatagatagaaagacaaattcatacatcacacaaactgtgggttaggttttgagtattaacacttattatatttatgcatgaaaa |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2262073 |
attaaactcttaaataatagatagaaagacaaattcatacatcacacaaactgtgggttaggttttgagtattaacacttattatatttatgcatgaaaa |
2261974 |
T |
|
| Q |
108 |
tagacatacctctactgcagctgctacacgcaaaatagtagcttctgcccatggtcggccaattacttgcaaacctattggaagtccttctttatcgtaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2261973 |
tagacatacctctactgcagctgctacacgcaaaatagtagcctctgcccatggtcggccaattacttgcaaacctattggaagtccttctttatcgtaa |
2261874 |
T |
|
| Q |
208 |
cccacctatagaaggaacatgtctgttaaacgaataaacagcatatatgataatatcagtctagtgacaaagataggtaaatggattgaggggaagtgaa |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2261873 |
cccacctatagaaggaacatgtcagttaaacgaataaacagcatatatgataatatcagtctagtgacaaagataggtaaatggattgaggggaagtgga |
2261774 |
T |
|
| Q |
308 |
tgagggatttatttcagtgagaacttcaattgttaaatgaactgcaggtgttattatctaaggtgattttgaacatatgggactctgatttttgtgatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2261773 |
tgagggatttatttcagtgagaacttcaattgttaaatgaactgcaggtgttattatctaaggtgattttgaacatatgggactctgattttcgtgatga |
2261674 |
T |
|
| Q |
408 |
aaacgagatcagcctgggaagtatacagtagagacaac |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2261673 |
aaacgagatcagcctgggaagtatacagtagagacaac |
2261636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University