View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_12 (Length: 438)
Name: NF2086_low_12
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 420
Target Start/End: Complemental strand, 51028628 - 51028193
Alignment:
| Q |
11 |
cagagaacaaaaaactacaaagaaatcaagttctgaactcttaaacaacaagaacaaaacacaagctccaaacccatatctctttaacccaaattcacaa |
110 |
Q |
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|||| |||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51028628 |
cagaaaacaaaaaactacaaagaaatcaaattttgaaatcttaaacaacaagaacaaaacacaagctccaaacccatatctctttaacccaaattcacaa |
51028529 |
T |
|
| Q |
111 |
tctgatgcaaatataaaatgttaggggttttcaaaacaaaacaccatcaaatctgatgcgaatttaaatggttaaattatgaattttgaaggggaagaaa |
210 |
Q |
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| T |
51028528 |
tctggtgcaaatataaaatgttaggggttttcaaaacaaaccaccatcaaatctgatgcgaatttaaatggttaaattatgaattttgaaggggaagaaa |
51028429 |
T |
|
| Q |
211 |
atta-ggattagaatcaaag---------tttgatttaaagcataaattggcaaagaacatgcacttgagtaagaagacgaaggaagatggtgagaacag |
300 |
Q |
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|||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51028428 |
attagggtttagaatcaaagtttgaggtttttgatttaaagtataaattggcaaagaacatgcacttgagtaagaagacgaaggaagatggtgagaacag |
51028329 |
T |
|
| Q |
301 |
ta---------------gatgtcatatgagtatgagtttaaggttatggatttgggaacaagga-gatgaaagggaatcaataatgggaatgaatgagtt |
384 |
Q |
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| T |
51028328 |
taggtgaaaggcaatatgatgtcatatgagtatgagtttaaggttatggatttgggaacaaggaggatgaaagggaatcaataatgggaatgaatgagtt |
51028229 |
T |
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| Q |
385 |
tgtggaggatttgaacaaagttgacatggagataaa |
420 |
Q |
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| T |
51028228 |
tgtggaggatttgaacaaagttgacatggagataaa |
51028193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 21481657 - 21481550
Alignment:
| Q |
109 |
aatctgatgcaaatataaaatgttaggggttttcaaaacaaaacaccatcaaatctgatgcgaatttaaatggttaaattatgaattttgaaggggaaga |
208 |
Q |
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||||||||||||| || || |||| ||||||||||| |||||||| | ||||||||| || ||||| ||||| ||| ||||||||| ||||||||| |
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| T |
21481657 |
aatctgatgcaaacttataaggttaagggttttcaaatcaaaacactgttaaatctgatctaaaattaaaaggttatattctgaattttggaggggaaga |
21481558 |
T |
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| Q |
209 |
aaattagg |
216 |
Q |
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| T |
21481557 |
aaattagg |
21481550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 8105282 - 8105235
Alignment:
| Q |
169 |
cgaatttaaatggttaaattatgaattttgaaggggaagaaaattagg |
216 |
Q |
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| T |
8105282 |
cgaatttaaaaggttatattctgaattttggaggggaagaaaattagg |
8105235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 420
Target Start/End: Complemental strand, 1950029 - 1950000
Alignment:
| Q |
391 |
ggatttgaacaaagttgacatggagataaa |
420 |
Q |
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| T |
1950029 |
ggatttgaacaaagttgacatggagataaa |
1950000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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