View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2086_low_13 (Length: 396)
Name: NF2086_low_13
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 46 - 388
Target Start/End: Complemental strand, 48046284 - 48045943
Alignment:
| Q |
46 |
aaaatttttatgcaacatataaaccaccattcatataatctttatctataatgatctcatccatattgataattttacttgcatttacctcttgtttttt |
145 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48046284 |
aaaatttttatgcaacatataaaccaccattcatagaatctttatctataatgatctcatccatattgataattttacttgcatttacctcttgtttttt |
48046185 |
T |
|
| Q |
146 |
cttttcgtatcttacattaattttgctagtgaaattttcaattgagatgcatcacacaattgttttcaaatgaaaaactctctttacgacatttacattc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48046184 |
cttttcgtatcttacattaattttgctagtgaaattttcaattgagatgcatcacacaattgttttcaaatgaaaaactctctttacgacatttacattc |
48046085 |
T |
|
| Q |
246 |
aacttattacaacaagttaaattaaatttttacatttttatagaatttttcgacaacaacagtaatcatgaaaacattcgttgttttatttaccattttc |
345 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48046084 |
aacttattacaacaagttaaattaaatt--------tttatagaatttttcgacaacaacagtaatcatgaaaacattagttgttttatttaccattttc |
48045993 |
T |
|
| Q |
346 |
tca-------agatttgaattctagtctctgaactcttacaatattcttc |
388 |
Q |
| |
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||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
48045992 |
tcatttattgagatttgaattctagtctctgaactctttcaatattcttc |
48045943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 48038421 - 48038370
Alignment:
| Q |
219 |
aaaactctctttacgacatttacattcaacttattacaacaagttaaattaa |
270 |
Q |
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|||||| |||||| |||| ||||||| ||||||||||||||||||||||||| |
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| T |
48038421 |
aaaactttctttaagacaattacatttaacttattacaacaagttaaattaa |
48038370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 35213978 - 35213873
Alignment:
| Q |
41 |
tgatgaaaatttttatgcaacatataaaccaccattcatataatctttatctataatgatctcatccatattgataattttacttgcatttacctcttgt |
140 |
Q |
| |
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|||||||| |||||||||||||| | || ||||| || || |||||||||||| ||||| |||||| ||||| |||| ||| ||||||||||||| ||| |
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| T |
35213978 |
tgatgaaattttttatgcaacatttgaaacaccactcctagaatctttatctaaaatgacctcatcaatatttataaatttccttgcatttaccttatgt |
35213879 |
T |
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| Q |
141 |
tttttc |
146 |
Q |
| |
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|||||| |
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| T |
35213878 |
tttttc |
35213873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 31023626 - 31023543
Alignment:
| Q |
50 |
tttttatgcaacatataaaccaccattcatataatctttatctataatgatctcatccatattgataattttacttgcatttac |
133 |
Q |
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|||| |||||||| || |||||||| || || ||||||||||| | ||||||||||| | ||| |||| ||| ||||||||||| |
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| T |
31023626 |
ttttaatgcaacacatgaaccaccactcctagaatctttatctttgatgatctcatcaaaattaataaattttcttgcatttac |
31023543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 43396710 - 43396613
Alignment:
| Q |
46 |
aaaatttttatgcaacatataaaccaccattcatataatctttatctataatgatctcatccatattgataattttacttgcatttacctcttgtttttt |
145 |
Q |
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|||||||| |||||||| | || |||||||| || ||| |||||||| |||| |||||| ||||| |||| ||||| |||||||||||| | |||||| |
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| T |
43396710 |
aaaattttaatgcaacacgttaatcaccattcctagaatatttatcta--atgacctcatcaatattaataaatttacctgcatttacctcatatttttt |
43396613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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