View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_18 (Length: 369)
Name: NF2086_low_18
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 6948853 - 6949205
Alignment:
| Q |
1 |
tgagatggacatcatcataatgccaccgtagttttgtgagattacaaaatgtagtttttagcaaaatcattgtggctcaacttatattcactcaatctcg |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6948853 |
tgagattgacaaaatcataatgccaccgtagttttgtgagattacaaaatgtagtttttagcaaaatcattgtggctcaacttatattcactcaatctca |
6948952 |
T |
|
| Q |
101 |
cctttaatcaaaacgt-cacttcactgtaatgttataacaaagtgtctactccagaaaagatataaataataatgtaatgtaggattggtgatcatgtta |
199 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6948953 |
cctttaatcaaaacgtacacttcactgtaatgttataacaaagtgtctactccagaaaagatataaataataatgtaatgtaggattggtgatcatgtta |
6949052 |
T |
|
| Q |
200 |
cagtgaccaacattaacctgcattcttttctatctttgagtctannnnnnnnnnnnnnnngtgagcaaatctttgagtctattaataaaaaataaattcc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6949053 |
cagtgaccaacattaacctgcattcttttctatctttgagtctattttttgtatttttttgtgagcaaatctttgagtctattaataaaaaataaattcc |
6949152 |
T |
|
| Q |
300 |
tctgttccttgatttgtgttccaatgcttcattgttatctgttcccttcttta |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6949153 |
tctgttccttgatttgtgttccaatgcttcattgttatctgttcccttcttta |
6949205 |
T |
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