View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_19 (Length: 367)
Name: NF2086_low_19
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 7338079 - 7338420
Alignment:
| Q |
8 |
aaaatataaaatctaatggttgtgataaaagttgcggaaaaagcaaatctttaatgaaaacataagcatacacgctcttctttgatacaacatgcactct |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7338079 |
aaaaaataaaatctaatggttgtgataaaagttgcggaaaaagcaaatctttaatgaaaacataagcatgcacgctcttctttgatacaacatgcactct |
7338178 |
T |
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| Q |
108 |
ccttcttccttctctcatagtctcacaggtcacaactactctccctttccctctccctctcatcgacgcctaatcatttttattcctgaacaaataaagg |
207 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7338179 |
ccttcttccttctctcatagtctcacaggtcacagctactctccctttccctctccctctcatcgacgcctaatcatttttattcct-aacaaataaagg |
7338277 |
T |
|
| Q |
208 |
taacatcaactgaac-aaataacaatcttaaaatcattaatacttatttttaaaacatcacatccagtaggcatgaaataacacccagtaggcatcacgg |
306 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7338278 |
taacatcaactgaacaaaataacaattttaaaatcattaatacttatttttaaaacatcacatccagtaggcatgaaataacacccagtaggcatcacgg |
7338377 |
T |
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| Q |
307 |
aacaacacaaaaattgcaaaatttccttctataaaggaccaat |
349 |
Q |
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| T |
7338378 |
aacaacacaaaaattgcaaaatttccttctataaaggaccaat |
7338420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 7338797 - 7338729
Alignment:
| Q |
8 |
aaaatataaaatctaatggttgtgat-aaaagttgcggaaaaagcaaatctttaatgaaaacataagcat |
76 |
Q |
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|||| |||||||| |||||||||||| |||||||| |||||| |||||||||||||||||| | |||||| |
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| T |
7338797 |
aaaaaataaaatc-aatggttgtgattaaaagttgtggaaaaggcaaatctttaatgaaaaaagaagcat |
7338729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 349
Target Start/End: Complemental strand, 39310961 - 39310807
Alignment:
| Q |
196 |
aacaaataaaggtaacatcaactgaacaaataacaatcttaaaatcattaatacttatttttaaaacatcacatccagtaggcatgaaataacac-ccag |
294 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||| |||| || |||||||||| || | |
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| T |
39310961 |
aacaaataaaggtaacatcaactaaacaaataacaatc-taaaatcattactaattctttttaaaacatcacacccagaagccatgaaataaaactgaac |
39310863 |
T |
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| Q |
295 |
taggcatcacggaacaacacaaaaatt-gcaaaatttccttctataaaggaccaat |
349 |
Q |
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| T |
39310862 |
ttggcatcaccgtacaacacaaaacttagcaaaatcaccttctataaagaaccaat |
39310807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 24485346 - 24485258
Alignment:
| Q |
198 |
caaataaaggtaacatcaactgaacaaataacaatcttaaaatcattaatacttatttttaaaacatcacatccagtaggcatgaaataa |
287 |
Q |
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||||||||||||||||||| | |||||||||||||| ||||||||||| || || |||||||||||||||| ||| || |||||||||| |
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| T |
24485346 |
caaataaaggtaacatcaattaaacaaataacaatc-taaaatcattactaattctttttaaaacatcacacccaaaagccatgaaataa |
24485258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 34228659 - 34228613
Alignment:
| Q |
196 |
aacaaataaaggtaacatcaactgaacaaataacaatcttaaaatcat |
243 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
34228659 |
aacaaataaaggtaacatcaactaaacaaataacaatc-taaaatcat |
34228613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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