View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_low_2 (Length: 722)

Name: NF2086_low_2
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_low_2
NF2086_low_2
[»] chr7 (1 HSPs)
chr7 (17-713)||(39109060-39109756)
[»] chr1 (1 HSPs)
chr1 (622-685)||(33522479-33522542)


Alignment Details
Target: chr7 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 17 - 713
Target Start/End: Complemental strand, 39109756 - 39109060
Alignment:
Q  17 ccaacttgttgcagcaatcactcctgagcaattctttctctttgttccattcttcccattttctattatgaatttctcagctctacatccagtgaggata 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39109756 ccaacttgttgcagcaatcactcctgagcaattctttctctttgtttcattcttcccattttctattatgaatttctcagctctacatccagtgaggata 39109657  T
Q  117 actgcgccattttcaacagcatcaaccaaccaagttgagtcagtaccctttttatctccggttctacaaccgtaacagcacgaaccgcaataatgatctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39109656 actgcgccattttcaacagcatcaaccaaccaagttgagtcagtaccctttttatctccggttctacaaccgtaacagcacgaaccgcaataatgatctt 39109557  T
Q  217 ctgaagcattcactgcaactgactcgacttttaaaccaattctctctcaccctttccgaagaacttgatttttaaagctttgcttgttgcatttatctgt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39109556 ctgaagcattcactgcaactgactcgacttttaaaccaattctctcacaccctttccgaagaacttgattttgaaagctttgcttgttgcatttatctgt 39109457  T
Q  317 cacaccaatccttctgcataccgagtccatagcagattgataatcagagcttgtgaaaagcggtagtttatatttttcggaccattccttcttaacagag 416  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39109456 cacaccaatccttctgcataccgagtccatagcagattgatagtcagagcttgtgaaaagcggtagtttatatttttcggaccattccttcttaacagag 39109357  T
Q  417 tcaggtgttctaacacaagcagcccagtttatagctgaacctccaccgactgttgagccagctaagatcatcattttaccgtcaagagttggcatgattc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39109356 tcaggtgttctaacacaagcagcccagtttatagctgaacctccaccgactgttgagccagctaagatcatcattttaccgtcaagagttggcatgattc 39109257  T
Q  517 cacctgattcatagagttcgttcatcgctgaactttccaaggaagaataatcttgagaaacaaaatactctcctttttctaggatgatcactttatgacc 616  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39109256 cacctgattcatagagctcgttcatcgctgaactttccaaggaagaataatcttgagaaacaaaatactctcctttttctaggatgatcactttatgacc 39109157  T
Q  617 tgagtttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatgacaacatcgcatttgatcttgtacacgttttgctcttcatct 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39109156 tgagtttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatgacaacatcgcatttgatcttgtacacgttttgctcttcatct 39109060  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 685
Target Start/End: Original strand, 33522479 - 33522542
Alignment:
Q  622 ttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatgacaacatcgcattt 685  Q
    |||||||||  ||||||||||||||||| |||| ||||||||| ||||| || ||||| |||||    
T  33522479 ttgcaagaacagcagctgcaactcctccaccgcaaccggaaccgacaattaccacatcacattt 33522542  T

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