View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_low_21 (Length: 346)

Name: NF2086_low_21
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_low_21
NF2086_low_21
[»] chr4 (5 HSPs)
chr4 (19-194)||(40011920-40012095)
chr4 (238-335)||(40012141-40012238)
chr4 (104-158)||(31053044-31053098)
chr4 (40-85)||(27763470-27763515)
chr4 (106-158)||(10355239-10355291)
[»] scaffold0245 (1 HSPs)
scaffold0245 (41-154)||(5659-5773)
[»] scaffold0229 (1 HSPs)
scaffold0229 (41-154)||(5989-6103)
[»] chr1 (5 HSPs)
chr1 (41-154)||(1279981-1280095)
chr1 (88-163)||(48252402-48252478)
chr1 (107-163)||(35120168-35120224)
chr1 (104-163)||(28016578-28016637)
chr1 (30-83)||(35120172-35120225)
[»] chr3 (3 HSPs)
chr3 (66-165)||(2973050-2973150)
chr3 (104-157)||(35970437-35970490)
chr3 (104-169)||(50888527-50888592)
[»] chr2 (4 HSPs)
chr2 (29-163)||(1465734-1465869)
chr2 (31-71)||(13292789-13292829)
chr2 (106-156)||(13056660-13056710)
chr2 (104-156)||(1465743-1465795)
[»] chr5 (2 HSPs)
chr5 (102-163)||(17358519-17358580)
chr5 (104-187)||(11649039-11649122)
[»] chr7 (3 HSPs)
chr7 (104-156)||(45429318-45429370)
chr7 (106-157)||(7465266-7465317)
chr7 (104-157)||(18358792-18358845)
[»] chr8 (1 HSPs)
chr8 (108-158)||(25487649-25487699)
[»] chr6 (2 HSPs)
chr6 (30-82)||(3245827-3245879)
chr6 (31-83)||(8514159-8514211)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 40011920 - 40012095
Alignment:
Q  19 atgcattgctggtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagtatcatattcattaatt 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  40011920 atgcattgttggtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaatgtggttgaaaaaacatgagtatcatattcattaatt 40012019  T
Q  119 gacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaacttgattga 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40012020 gacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaacttgattga 40012095  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 40012141 - 40012238
Alignment:
Q  238 gtaggttgtgtgataaggaaattggggctaaggattggaaattttcgaggttgatgaagctgtctggattgtctttcacggagggtcagttgatgatg 335  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40012141 gtaggttgtgtgataaggaaattagggctaaggattggaaattttcgaggttgatgaagctgtctggattgtctttcacggagggtcagttgatgatg 40012238  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 31053044 - 31053098
Alignment:
Q  104 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 158  Q
    ||||||||||||||||||  |  ||||||||||||  ||||||||||||||||||    
T  31053044 tcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 27763470 - 27763515
Alignment:
Q  40 attttacacattcatccaatgacgtattgtcatatcatttaatatc 85  Q
    ||||||||||| ||| ||| |||||||||||| |||||||||||||    
T  27763470 attttacacatgcattcaacgacgtattgtcacatcatttaatatc 27763515  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 10355291 - 10355239
Alignment:
Q  106 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 158  Q
    |||||||||||||||||||  || |||| ||||| ||||| ||||||||||||    
T  10355291 atattcattaattgacatgacaaaacatgattgaatgcatatgtaaaataatt 10355239  T

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Target: scaffold0245 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 5773 - 5659
Alignment:
Q  41 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 138  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  5773 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 5675  T
Q  139 agtgcatgtgtaaaat 154  Q
     |||||||||||||||    
T  5674 ggtgcatgtgtaaaat 5659  T

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Target: scaffold0229 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 6103 - 5989
Alignment:
Q  41 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 138  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  6103 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 6005  T
Q  139 agtgcatgtgtaaaat 154  Q
     |||||||||||||||    
T  6004 ggtgcatgtgtaaaat 5989  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 1280095 - 1279981
Alignment:
Q  41 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 138  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  1280095 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 1279997  T
Q  139 agtgcatgtgtaaaat 154  Q
     |||||||||||||||    
T  1279996 ggtgcatgtgtaaaat 1279981  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 48252478 - 48252402
Alignment:
Q  88 tgaaaaaacatgagt-atcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 163  Q
    |||||| |||||||| |||||||| |||||||||  ||||||||||||||||| || ||||||||||| ||| ||||    
T  48252478 tgaaaatacatgagttatcatatttattaattgatgtggaaacacatcattgaatgtatgtgtaaaattattgtaca 48252402  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 35120168 - 35120224
Alignment:
Q  107 tattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 163  Q
    |||| |||||||||||||| || |||||||||  |||||||||||||||| ||||||    
T  35120168 tatttattaattgacatggcaatacatcattggatgcatgtgtaaaataactttaca 35120224  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 28016637 - 28016578
Alignment:
Q  104 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 163  Q
    |||||||| |||||||| |||  ||||||||||||| || ||||||||||||||| ||||    
T  28016637 tcatattcgttaattgaaatgacaacacatcattgaatgtatgtgtaaaataattgtaca 28016578  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 35120225 - 35120172
Alignment:
Q  30 gtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaata 83  Q
    ||||||| ||||||||||||| |||||||||| |||||| ||| ||| ||||||    
T  35120225 gtgtaaagttattttacacatgcatccaatgatgtattgccatgtcaattaata 35120172  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 2973150 - 2973050
Alignment:
Q  66 ttgtcatatcatttaatatcgttgaaaaaacatgagta-tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaa 164  Q
    |||||| |||||||||||| |||||||| |||||| |  ||||||||||| |||||| || ||||| || ||| | ||||  ||||||||||||||||||    
T  2973150 ttgtcacatcatttaatatggttgaaaatacatgatttgtcatattcattgattgacgtgaaaacatattattaaatgcaaatgtaaaataattttacaa 2973051  T
Q  165 t 165  Q
    |    
T  2973050 t 2973050  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 35970490 - 35970437
Alignment:
Q  104 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 157  Q
    |||||||||||||||||| ||  ||||||| ||||| |||||||||||||||||    
T  35970490 tcatattcattaattgacgtgacaacacatgattgaatgcatgtgtaaaataat 35970437  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 50888592 - 50888527
Alignment:
Q  104 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgtta 169  Q
    |||||||||||||||||| | | || ||||||||   | ||||||||||||||||||||| |||||    
T  50888592 tcatattcattaattgacgttgtaagacatcatttgatacatgtgtaaaataattttacattgtta 50888527  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 1465734 - 1465869
Alignment:
Q  29 ggtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatattcattaattgacatggaa 127  Q
    |||||| | ||||||||||||| |||||||||| || ||||||  ||| ||||||    |||||| ||| ||||  ||||||| || || |||  |||||    
T  1465734 ggtgtacagttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatgaaaacacacgagttgtcatattgatcaaatgatgtggaa 1465833  T
Q  128 acacatcattgagtgcatgtgtaaaataattttaca 163  Q
    |||||||||||  |||||||||||||||||| ||||    
T  1465834 acacatcattggatgcatgtgtaaaataattgtaca 1465869  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 13292789 - 13292829
Alignment:
Q  31 tgtaaaattattttacacattcatccaatgacgtattgtca 71  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  13292789 tgtaaaattattttacacattcattcaatgatgtattgtca 13292829  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 13056660 - 13056710
Alignment:
Q  106 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 156  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||||||||||    
T  13056660 atattcattcattgatgtggcaacacatcattgaatgcatgtgtaaaataa 13056710  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 1465795 - 1465743
Alignment:
Q  104 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 156  Q
    ||||||| |||||||||| ||  ||||||||||||  ||||||||||||||||    
T  1465795 tcatatttattaattgacgtgacaacacatcattggatgcatgtgtaaaataa 1465743  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 17358580 - 17358519
Alignment:
Q  102 tatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 163  Q
    |||||| |||||||||||||||| | ||||||||| |  |||||||||||||||| ||||||    
T  17358580 tatcatcttcattaattgacatgaagacacatcatagtatgcatgtgtaaaataactttaca 17358519  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 11649122 - 11649039
Alignment:
Q  104 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaact 187  Q
    ||||||||||||||||| |||  ||||||||||||  ||||||| |||||||| ||||||  ||| || ||  |||||||||||    
T  11649122 tcatattcattaattgagatgtcaacacatcattgtatgcatgtataaaataactttacatagttggtgtataaaaattaaact 11649039  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 45429318 - 45429370
Alignment:
Q  104 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 156  Q
    |||||||||||||||||||||| |||| ||||||   ||||||||||||||||    
T  45429318 tcatattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 7465317 - 7465266
Alignment:
Q  106 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 157  Q
    ||||||||||||||||||  |||||||| ||||| | |||||||||||||||    
T  7465317 atattcattaattgacataaaaacacataattgaatccatgtgtaaaataat 7465266  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 18358845 - 18358792
Alignment:
Q  104 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 157  Q
    |||||||||||||||||||||  |||||||||||   |||||||| ||||||||    
T  18358845 tcatattcattaattgacatgacaacacatcatttgatgcatgtgcaaaataat 18358792  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 25487649 - 25487699
Alignment:
Q  108 attcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 158  Q
    |||||||||||||| ||| ||||||||||||| |  |||||||||||||||    
T  25487649 attcattaattgacgtggcaacacatcattgaatatatgtgtaaaataatt 25487699  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 3245879 - 3245827
Alignment:
Q  30 gtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaat 82  Q
    ||||||| ||||||||| |||  || ||||||||||||||||||||| |||||    
T  3245879 gtgtaaacttattttactcatatattcaatgacgtattgtcatatcaattaat 3245827  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 8514211 - 8514159
Alignment:
Q  31 tgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaata 83  Q
    |||| ||||||||||||||| ||| |||||| ||||||||| |||| ||||||    
T  8514211 tgtataattattttacacatacatgcaatgatgtattgtcacatcaattaata 8514159  T

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