View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_28 (Length: 298)
Name: NF2086_low_28
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 36304678 - 36304560
Alignment:
| Q |
16 |
atgggcgactctaagaattgaactcaggttcttttcctggagagagtgtattaccaactccctcgacatattgttaaaaaaggagagtgtattttgaatg |
115 |
Q |
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| T |
36304678 |
atgggcaactctaagaattaaactcaggttcttttcctggagagagtgtattaccaactccctcgacatattgttaaaaaaggagagtgttttttgaatg |
36304579 |
T |
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| Q |
116 |
ataagaaattaaatctgat |
134 |
Q |
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| T |
36304578 |
ataagaaattaaatctgat |
36304560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 36304533 - 36304419
Alignment:
| Q |
161 |
tatggacaattcaaaagacaattgtcaatgtcattaataattccgaaatggatcgaatgcagttgtaatttcatgtgtaagttgaagatcagatggttat |
260 |
Q |
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| T |
36304533 |
tatggacaattcaaaagacaactgtcaatgtcattaataattccgaaatggatcaaatgcagttgtaatttcatatgtaagttgaagatcagatggttat |
36304434 |
T |
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| Q |
261 |
aatttatgattttat |
275 |
Q |
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| T |
36304433 |
aatttatgattttat |
36304419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 36319780 - 36319728
Alignment:
| Q |
222 |
gttgtaatttcatgtgtaagttgaagatcagatggttataatttatgatttta |
274 |
Q |
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||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
36319780 |
gttgtaatttcgtctgtaagttgaagatcggatggttataatttatgatttta |
36319728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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