View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_3 (Length: 679)
Name: NF2086_low_3
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_3 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 194 - 546
Target Start/End: Complemental strand, 31042951 - 31042595
Alignment:
| Q |
194 |
ttttaaatacaatatgtatttatcagcatcatattatatggtccaagtctttaa---cttctgtaacttgcacaaatagagagacggtggcgtgtgagga |
290 |
Q |
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||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31042951 |
ttttagatacagtatgtatttatcatgatcatattatatggtccaagtctttaattacttctgtaacttgcacaaatagagagacggtggcgtgcgagga |
31042852 |
T |
|
| Q |
291 |
agaggatgaaacgacgacaaagttacaaacgcagtagcagccagatgcagcgacttcaagggatatcaacggcctatgtgttgtgcgtgcaaggtggagg |
390 |
Q |
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|||||||| |||||| |||| ||||| ||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31042851 |
agaggatgcaacgactacaaggttacgaacgctatagaagccagatgcagcaacttcaaaggatatcaacggcctatgtgttgtgcgtgcaaggtggagg |
31042752 |
T |
|
| Q |
391 |
cggcgacaaactatgttgcaaaagccgatgatcctcttaatctattcaacaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagt |
490 |
Q |
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| T |
31042751 |
cgtcgacgaactatgtcgcaaaagccgatgatcctcttaatctatttcacaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagt |
31042652 |
T |
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| Q |
491 |
tgaatagaataaataagataatcgagaactacaagtagtcagcacca-tagagtaaa |
546 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |
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| T |
31042651 |
tgaatagaataaataagacaattgagaactacaagtagtcagcaccattagagtaaa |
31042595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 31106697 - 31106339
Alignment:
| Q |
1 |
tctccaaacagatccaaagtttcttgttgtttataggtcttcgtatgctgagaatttgcatgttattttttagaccttatattaagaagacgtctgagag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31106697 |
tctcaaaacagatccaaagtttcttgttgtttataggtattcgtatgctgagaatttgtatattattttttagaccttatattaagaagacgtctgagag |
31106598 |
T |
|
| Q |
101 |
gaatttcaacaccagtgcacctcttatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106597 |
gaatttcaacaccagtgcacctcttatgtatgtgacagtgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaa |
31106498 |
T |
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| Q |
201 |
tacaatatgtatttatcagcatcatattatatggtccaagtctttaacttctgtaacttgcacaaatagagagacggtggcgtgtgaggaagaggatgaa |
300 |
Q |
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| || |||||||||| || |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| || |||||| | ||| | |
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| T |
31106497 |
tgcattatgtatttaccattatcatattatatggtccaagtcttcaacttacgtgacttgcacaaatagagagacggtggtgttcaaggaagcgaatgca |
31106398 |
T |
|
| Q |
301 |
acgacgacaaagttacaaacgcagtagcagccagatgcagcgacttcaagggatatcaa |
359 |
Q |
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|||| ||||| |||| ||||||| |||| || || |||| |||||||||||||||||| |
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| T |
31106397 |
acgatgacaaggttatgaacgcaggagcatcccgaagcagtgacttcaagggatatcaa |
31106339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 401 - 508
Target Start/End: Complemental strand, 31108032 - 31107925
Alignment:
| Q |
401 |
ctatgttgcaaaagccgatgatcctcttaatctattcaacaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaat |
500 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
31108032 |
ctatgttgcaaaagccgatgattctcttaatgtattcaacaaacatcaaagacctagcagaaatcatgaaactatcaccactcatatagttgaagagaat |
31107933 |
T |
|
| Q |
501 |
aaataaga |
508 |
Q |
| |
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|||||||| |
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| T |
31107932 |
aaataaga |
31107925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 443 - 576
Target Start/End: Complemental strand, 31106345 - 31106207
Alignment:
| Q |
443 |
atatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagataatcgagaactaca----agtagtcagcacca- |
537 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||| || || ||||||| ||| |||||||||| |
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| T |
31106345 |
atatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatggaaaactacaagctagttgtcagcaccat |
31106246 |
T |
|
| Q |
538 |
tagagtaaattattttgaaccattcaatatcaacattat |
576 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31106245 |
tagagtaaattattttgaaccattcaatatcaacattat |
31106207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 31094776 - 31094907
Alignment:
| Q |
143 |
gatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatacaatatgtatttatcagcatcatattatatggtccaagtc |
242 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||| |
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| T |
31094776 |
gatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatttcccatgatcatattatatggtccaagtc |
31094875 |
T |
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| Q |
243 |
tttaacttctgtaacttgcacaaatagagaga |
274 |
Q |
| |
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|| ||||| |||||| ||||||||||||||| |
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| T |
31094876 |
ttcaacttaagtaactagcacaaatagagaga |
31094907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 139 - 367
Target Start/End: Complemental strand, 31050544 - 31050321
Alignment:
| Q |
139 |
tgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatacaatatgtatttatcagcatcatattatatggtcca |
238 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| | ||||||||| ||||||||||||| |||||||| | | |||||| ||||||||||| |
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| T |
31050544 |
tgacgatgatgtttttttagatgcacatgaagcactgt-----ttaacaaaaccattttaaatacattatgtattaactatgatcatactatatggtcca |
31050450 |
T |
|
| Q |
239 |
agtctttaacttctgtaacttgcacaaatagagagacggtggcgtgtgaggaagaggatgaaacgacgacaaagttacaaacgcagtagcagccagatgc |
338 |
Q |
| |
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|||||| ||||| |||||| ||||||||||||||| || | ||| ||| ||||||| | ||||||| |||||||| ||||||||||| ||| || |
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| T |
31050449 |
agtcttcaacttgagtaactagcacaaatagagagatggcgtcgtacgagttggaggatgcagcgacgacggggttacaaatgcagtagcagctagaagc |
31050350 |
T |
|
| Q |
339 |
agcgacttcaagggatatcaacggcctat |
367 |
Q |
| |
|
|||||| || ||||||| |||| ||||| |
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|
| T |
31050349 |
agcgaccgcatgggatattaacgccctat |
31050321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 21150284 - 21150347
Alignment:
| Q |
150 |
cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatacaatatgtatt |
213 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| ||||| |||||||||| ||| |||| |
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| T |
21150284 |
ctttattagatgcacatgaaacactctcacatttaacataatcaatttaaatacattatatatt |
21150347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 21181570 - 21181631
Alignment:
| Q |
143 |
gatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaataca |
204 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| | |||||||||||| ||||||||| |||||| |
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|
| T |
21181570 |
gatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaataca |
21181631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 31095074 - 31095134
Alignment:
| Q |
433 |
tattcaacaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttga |
493 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| | |||| |||||||| |||||||||| |
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| T |
31095074 |
tattcaacaaacatcaaagacctagcaggaatagaggaactgtcaccactgatatagttga |
31095134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 139 - 344
Target Start/End: Original strand, 3488 - 3693
Alignment:
| Q |
139 |
tgacgatgatacttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatacaatatgtatttatcagcatcatattatatggtcca |
238 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||| ||||||||| || ||||||||||| |||||| |
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|
| T |
3488 |
tgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatttcccatgatcatattataaggtcca |
3587 |
T |
|
| Q |
239 |
agtctttaacttctgtaacttgcacaaatagagagacggtggcgtgtgaggaagaggatgaaacgacgacaaagttacaaacgcagtagcagccagatgc |
338 |
Q |
| |
|
|||||| |||||| |||||| |||||||| |||||| |||| ||| |||||||||||||| | ||||||| |||||||| || |||||||||||| || |
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| T |
3588 |
agtcttcaacttcagtaactagcacaaatggagagatggtgtcgtatgaggaagaggatgcagcgacgacggggttacaaatgcggtagcagccagaagc |
3687 |
T |
|
| Q |
339 |
agcgac |
344 |
Q |
| |
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|||||| |
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| T |
3688 |
agcgac |
3693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 65257 - 65192
Alignment:
| Q |
150 |
cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatacaatatgtattta |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||| |
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|
| T |
65257 |
cttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatattta |
65192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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