View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_35 (Length: 278)
Name: NF2086_low_35
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 36373530 - 36373292
Alignment:
| Q |
1 |
taaccaccttcttcatcacatgataatggagactcattgtatggctcatgatttaacacatcaacagcgttctttcctttagcatcagtcaactgatttt |
100 |
Q |
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| T |
36373530 |
taaccaccttcttcatcacatgataatggagactcattgtatggctcatgatttaacacatcaacagcgttctttcctttagcatcagtcaactgatttt |
36373431 |
T |
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| Q |
101 |
ccttattaacctttggaccactcttaccatcatcacaggatttgaagttcaaaacattcataggaccactaatattaggatcattgcccataacttcata |
200 |
Q |
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| T |
36373430 |
ccttattaacctttggaccactcttaccatcatcacaggatttgaagttcaaaacattcattggaccactaatattaggatcattgcccataacttcata |
36373331 |
T |
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| Q |
201 |
cacaatcttgttttgaaccgatcttatgacatatgaaac |
239 |
Q |
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| T |
36373330 |
cacaatcttgttttgaaccgatcttatgacatatgaaac |
36373292 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 32252523 - 32252580
Alignment:
| Q |
170 |
taatattaggatcattgcccataacttcatacacaatcttgttttgaaccgatcttat |
227 |
Q |
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|||||| || |||||| |||||||||| |||||||||||||||||| || |||||||| |
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| T |
32252523 |
taatatcagtatcatttcccataacttgatacacaatcttgttttgcacagatcttat |
32252580 |
T |
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