View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_4 (Length: 630)
Name: NF2086_low_4
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 18 - 621
Target Start/End: Original strand, 5902723 - 5903324
Alignment:
| Q |
18 |
actagtggttggttaggaaaagatggaaattggaggataattattggtagcaaaagaaacactaggggaattgcaattttgtataagagtaaagatttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5902723 |
actagtggttggttaggaaaagatggaaattggaggataattattggtagcaaaagaaacactaggggaattgcaattttgtataagagtaaagatttta |
5902822 |
T |
|
| Q |
118 |
ttaattggattaaatcaaaacaccctttgcattcagctaaaggcactggaatgtgggagtgtcctgannnnnnncctgttttgaaaattggtagatttgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5902823 |
ttaattggattaaatcaaaacaccctttgcattcagctaaaggcactggaatgtgggagtgtcctgatttttttcctgttttgaaaattggtagatttgg |
5902922 |
T |
|
| Q |
218 |
tgttgacacgtcattaaatagtgacgatgttaggcatgtattgaaggttagtttggatgataaaaaacatgattattatctcattgggacttataatgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5902923 |
tgttgacacgtcattaaatagtgacgatgttaggcatgtattgaaggttagtttggatgataaaaaacatgattattatctcattgggacttataatgat |
5903022 |
T |
|
| Q |
318 |
gaaaaggacaaatttgtccctgataaagggtttgaggaggaaaatattgaacaaattttgagatatgattatggaaaatattatgcatcaaaaactttct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903023 |
gaaaaggacaaatttgtccctgataaagggtttgaggaggaaaatattgaacaaattttgagatatgattatggaaaatattatgcatcaaaaactttct |
5903122 |
T |
|
| Q |
418 |
ttgatgatgggaagaatagaaggattttgcttggatgggtcaatgagtcttcaagtgttgctgatgatatcaagaaaggatggtctggaatccaagtaag |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5903123 |
ttgatgatgggaagaatagaaggattttgcttggatgggtcaatgagtcttcaagtgttgctgatgatatcaagaaaggatggtctggaatccatgtaag |
5903222 |
T |
|
| Q |
518 |
ttgtttgcaataattttcttaatatgttgttcattttctaaaatatataatatagttataaatattgactattgactcaataatctaccttagtttatat |
617 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5903223 |
ttggttgcaataattttcttaatattttgttcattttctaaa--atataatatagttataaatattgactattgactcaataatctaccttagtttattt |
5903320 |
T |
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| Q |
618 |
tctt |
621 |
Q |
| |
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|||| |
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| T |
5903321 |
tctt |
5903324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 375 - 519
Target Start/End: Complemental strand, 42875257 - 42875113
Alignment:
| Q |
375 |
ttgagatatgattatggaaaatattatgcatcaaaaactttctttgatgatgggaagaatagaaggattttgcttggatgggtcaatgagtcttcaagtg |
474 |
Q |
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||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||| | || |||| ||||| |||||||||| |
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| T |
42875257 |
ttgagatatgattatgggaaatattatgcatcaaaaacattttttgatgatgggaagaatagaaggatcttgttgggttgggctaatgaatcttcaagtg |
42875158 |
T |
|
| Q |
475 |
ttgctgatgatatcaagaaaggatggtctggaatccaagtaagtt |
519 |
Q |
| |
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||| ||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
42875157 |
ttgttgatgatgtcaagaaaggatggtctggaatccatgtaagtt |
42875113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 42875606 - 42875448
Alignment:
| Q |
26 |
ttggttaggaaaagatggaaattggaggataattattggtagcaaaagaaacactaggggaattgcaattttgtataagagtaaagattttattaattgg |
125 |
Q |
| |
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|||| ||||||||||||| |||||||| || | ||||| |||||| | | | | ||||||||||||| |||| || |||||| ||||| || ||||| |
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| T |
42875606 |
ttggctaggaaaagatggttattggagggtattaattggaagcaaagtacatagaaagggaattgcaattatgtacaaaagtaaaaattttgttgattgg |
42875507 |
T |
|
| Q |
126 |
attaaatcaaaacaccctttgcattcagctaaaggcactggaatgtgggagtgtcctga |
184 |
Q |
| |
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|| || | ||||| ||||| ||||||||| |||| || |||||||||||||||||||| |
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|
| T |
42875506 |
tttgaagccaaacatcctttacattcagctgaaggaacaggaatgtgggagtgtcctga |
42875448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 42875388 - 42875315
Alignment:
| Q |
238 |
gtgacgatgttaggcatgtattgaaggttagtttggatgataaaaaacatgattattatctcattgggacttat |
311 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||||||||| | |||||||||| | ||| | |||||||||||| |
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| T |
42875388 |
gtgatgatgttagacatgtgcttaaggttagtttggatgacacaaaacatgatcactatttgattgggacttat |
42875315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 485
Target Start/End: Original strand, 1055322 - 1055428
Alignment:
| Q |
379 |
gatatgattatggaaaatattatgcatcaaaaactttctttgatgatgggaagaatagaaggattttgcttggatgggtcaatgagtcttcaagtgttgc |
478 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||| ||||||| | ||||| || |||||||||||||||||||| |||| |||||| | |||| |||||| |
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| T |
1055322 |
gataagattaagcaaaatattatgcatcaaaatatttctttaaggatggaaaaaatagaaggattttgcttggttgggccaatgactactcaaatgttgc |
1055421 |
T |
|
| Q |
479 |
tgatgat |
485 |
Q |
| |
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| ||||| |
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| T |
1055422 |
taatgat |
1055428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 27991025 - 27990925
Alignment:
| Q |
84 |
ggaattgcaattttgtataagagtaaagattttattaattggattaaatcaaaacaccctttgcattcagctaaaggcactggaatgtgggagtgtcctg |
183 |
Q |
| |
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|||||| || |||| | ||| |||||||||||||||||||||||| || | ||| | ||||| ||||||| ||| | |||||||| ||||||||||| |
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| T |
27991025 |
ggaattacacttttatttaaaagtaaagattttattaattggattcaagctaaatatcctttttattcagccaaaaaaattggaatgttggagtgtcctg |
27990926 |
T |
|
| Q |
184 |
a |
184 |
Q |
| |
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| |
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|
| T |
27990925 |
a |
27990925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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