View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_40 (Length: 249)
Name: NF2086_low_40
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36304948 - 36305186
Alignment:
| Q |
1 |
tccattgcaagaacaagaagctacattttctcaaccaagcaagcaaacctcaatactctcacttaccctagatgagttccaatgcaagagtggaaagagc |
100 |
Q |
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| T |
36304948 |
tccattgcaagaacaagaagctacattttctcaaccaagcaagcaaacctcaatactctcacttaccctagatgagttccaatgcaagagtggaaagagc |
36305047 |
T |
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| Q |
101 |
tttagttccctcaacatggatgaattccttgccagcatttggagttccaatgatgaagctaccactcaaactcataatactaaaaatgttgtaacaacac |
200 |
Q |
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| T |
36305048 |
tttagttccctcaacatggatgaattccttgccagcatttggagttccaatgatgaagctaccactcatactcataatactaaaaatgttgtaacaacac |
36305147 |
T |
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| Q |
201 |
aacataccatttcccaacaatttggtaattcattctctg |
239 |
Q |
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| T |
36305148 |
aacacaccatttcccaacaatttggtaattcattctctg |
36305186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 36320552 - 36320733
Alignment:
| Q |
55 |
actctcacttaccctagatgagttccaatgcaagagtggaaagagctttagttccctcaacatggatgaattccttgccagcatttggagttccaatgat |
154 |
Q |
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| T |
36320552 |
actctcactcaccctggatgatttccaatgcaataatgataagaactttagctccctcaacatggatgagttcctagctagcatttggagttccaatgat |
36320651 |
T |
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| Q |
155 |
gaagctaccactcaaactc---ataatactaaaaatgttgtaacaacacaacataccatttcccaacaatttggtaattcat |
233 |
Q |
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| T |
36320652 |
gaagatactgctcaaactcacaacaatactgaaagtgttgcaacagcagaacacaccatttcccaacagcttggtaattcat |
36320733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 35566638 - 35566723
Alignment:
| Q |
4 |
attgcaagaacaagaag---ctacattttctcaaccaagcaagcaaacctcaatactctcacttaccctagatgagttccaatgca |
86 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| |||| ||||| ||||||||| ||||| ||||| |||||||||| |
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| T |
35566638 |
attgcaagaacaagaagaatctacattttctcaaccgagcaatcaaaactcaacactctcactcacccttgatgatttccaatgca |
35566723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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