View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_41 (Length: 249)
Name: NF2086_low_41
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 21156172 - 21156395
Alignment:
| Q |
22 |
aacaaatatatatgaacagctaaattaatatcaaaatggcacatatagattgaataagaaagatgccacttttagaacaatgttaatggtgattactcaa |
121 |
Q |
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| T |
21156172 |
aacaaatatatatgaacagctaaactaatatcaaagtggcacatatagattgaataagaaagatgccacttttagaacaatgttaatggtgattactcaa |
21156271 |
T |
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| Q |
122 |
agcaaatcttgcctagttacaaacgacactaacatatcagtaaatctatgtttactaacaattgactcgtacactttaatttacggcataaccatatata |
221 |
Q |
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| T |
21156272 |
agcaaatcttgcctagttacaaacgacactaacatatcagtaaatctatgtttactaacaattgactcatacact----tttacgtcataaccatatata |
21156367 |
T |
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| Q |
222 |
ataagcagaaaatattcctccgattaac |
249 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
21156368 |
ataagcagaaaatattcctccgattaac |
21156395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 4116878 - 4117104
Alignment:
| Q |
16 |
atgcaaaacaaatatatatgaacagctaaattaatatcaaaatggcacatatagattgaataagaaagatgccacttttagaacaatgttaatggtgatt |
115 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
4116878 |
atgcaaaacaaatatatacgaacagctaaactaatatcaaaatggcacatatagattgaataagaaagatgccacttttagaataatgttaacggtgatt |
4116977 |
T |
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| Q |
116 |
actcaaagcaaatcttgcctagttacaaacgacactaacatatcagtaaatctatgtttactaacaattgactcgtacactttaatttacggcataacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
4116978 |
actcaaagcaaatcttgcctagttacaaacgacactaacatatcagtaaatctatgtttactaacaattgactcatacact----tttacggcataacca |
4117073 |
T |
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| Q |
216 |
tatataataagcagaaaatattcctccgatt |
246 |
Q |
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| T |
4117074 |
tatataataagcagaaaatattcctccgatt |
4117104 |
T |
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