View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_42 (Length: 246)
Name: NF2086_low_42
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 52037123 - 52036889
Alignment:
| Q |
1 |
attaaattaatacaaaaatataatatgtcgtcgaataatttgatgatggacgcatatttgatcaaactttctttnnnnnnnnnnnnnnnnnnnnttgatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
52037123 |
attaaattaatacaaaaatataatatgtcgtcgaataatttgatgatggacacatatttgatcaaactttctttcaaaaaaaaaaaa-------ttgatc |
52037031 |
T |
|
| Q |
101 |
aaacttcagagtacaataatttt-annnnnnnnncactttttgaaactagggatctagtctaataagaatacttgaaaatgtatgtcgataatgaggaac |
199 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52037030 |
aaacttcagagtacaataatttttatttttttttcactttttgaaactagggatctagtctaataagaatacttgaaaatgtatgtcgataatgaggaac |
52036931 |
T |
|
| Q |
200 |
aattattctccactatgtgacaaagttcccttttgagtattag |
242 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
52036930 |
aattattctccactatgtgac-atgttcccttttgagtattag |
52036889 |
T |
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