View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_low_43 (Length: 241)

Name: NF2086_low_43
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_low_43
NF2086_low_43
[»] chr4 (3 HSPs)
chr4 (1-241)||(43807246-43807486)
chr4 (64-191)||(43807459-43807588)
chr4 (99-144)||(37439156-37439201)
[»] chr7 (3 HSPs)
chr7 (99-144)||(38123695-38123740)
chr7 (106-144)||(22310488-22310526)
chr7 (99-144)||(30182325-30182370)
[»] chr3 (1 HSPs)
chr3 (99-144)||(3776533-3776578)
[»] chr1 (6 HSPs)
chr1 (99-147)||(28083914-28083962)
chr1 (99-141)||(48549044-48549086)
chr1 (99-144)||(3515829-3515874)
chr1 (99-144)||(33693032-33693077)
chr1 (99-143)||(8381977-8382021)
chr1 (99-147)||(11049261-11049309)
[»] chr6 (1 HSPs)
chr6 (99-144)||(852543-852588)
[»] chr5 (1 HSPs)
chr5 (99-144)||(36639948-36639993)
[»] chr2 (1 HSPs)
chr2 (99-147)||(42982555-42982603)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43807246 - 43807486
Alignment:
Q  1 aaaaatccaaaagtgtatgtttggttatacttttggaagagggaaaactgaaaattgattccgaaatagtaaaattgattttgaaagtagattttagctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43807246 aaaaatccaaaagtgtatgtttggttatacttttggaagagggaaaactgaaaattgattccgaaatagtaaaattgattttgaaagtagattttagctg 43807345  T
Q  101 aagctagaaattgtagcttctaattctaaaattaatttttacacacagattattgttaatgatagatactttactttctagtcacttttagaagaggaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43807346 aagctagaaattgtagcttctaattctaaaattaatttttacacacagattattgttaatgatagatactttactttctagtcacttttagaagaggaaa 43807445  T
Q  201 aattgaataaataaaatagtaaaattgattttgacatgttt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43807446 aattgaataaataaaatagtaaaattgattttgacatgttt 43807486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 43807459 - 43807588
Alignment:
Q  64 aaatagtaaaattgattttgaaa-gtagattttagctgaagctagaaattgtagcttctaattctaaaattaatttttacacacagattattgttaatga 162  Q
    ||||||||||||||||||||| | ||    |||| | ||||||||| || ||||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  43807459 aaatagtaaaattgattttgacatgtttgatttaaccgaagctagagatcgtagcttataattctaaaattgatttttacactcagattattgttaatga 43807558  T
Q  163 tagatactttac-tttctagtcacttttag 191  Q
    |||||||||||| |||||| ||||||||||    
T  43807559 tagatactttacttttctactcacttttag 43807588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 37439156 - 37439201
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacac 144  Q
    |||||||||||||| |||||| |||||||| |||| ||||||||||    
T  37439156 tgaagctagaaattatagcttttaattctataattgatttttacac 37439201  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 38123740 - 38123695
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacac 144  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  38123740 tgaagctagaaattgtagcttctaattctagaattgatttttacac 38123695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 22310526 - 22310488
Alignment:
Q  106 agaaattgtagcttctaattctaaaattaatttttacac 144  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  22310526 agaaattatagcttctaattctagaattaatttttacac 22310488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 30182370 - 30182325
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacac 144  Q
    |||||||| |||||||||||| | |||||| |||||||||||||||    
T  30182370 tgaagctaaaaattgtagcttttgattctagaattaatttttacac 30182325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 3776533 - 3776578
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacac 144  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||    
T  3776533 tgaatctagaaattgtagcttctgattctagaattaatttttacac 3776578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 28083962 - 28083914
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacacaca 147  Q
    ||||||||||| ||||||||| | |||||| ||||||||||||||||||    
T  28083962 tgaagctagaatttgtagcttttgattctataattaatttttacacaca 28083914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 48549086 - 48549044
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaattttta 141  Q
    ||||||||||||||||||||||| |||||| |||| |||||||    
T  48549086 tgaagctagaaattgtagcttctgattctagaattgattttta 48549044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 3515829 - 3515874
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacac 144  Q
    ||||||||||||||||||||| | |||||| |||| ||||||||||    
T  3515829 tgaagctagaaattgtagcttttcattctagaattgatttttacac 3515874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 33693032 - 33693077
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacac 144  Q
    ||||||||||||||||||||| | |||||| |||| ||||||||||    
T  33693032 tgaagctagaaattgtagcttttgattctataattgatttttacac 33693077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 8381977 - 8382021
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttaca 143  Q
    ||||||||||||||||||| |||| ||||| |||| |||||||||    
T  8381977 tgaagctagaaattgtagcctctagttctagaattgatttttaca 8382021  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 11049261 - 11049309
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacacaca 147  Q
    ||||||||| | ||||||||| | ||||||||||| |||||||||||||    
T  11049261 tgaagctaggatttgtagcttttgattctaaaattgatttttacacaca 11049309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 852543 - 852588
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacac 144  Q
    |||||||||||||||||| |||| |||||| |||| ||||||||||    
T  852543 tgaagctagaaattgtaggttctgattctagaattgatttttacac 852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 36639948 - 36639993
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacac 144  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||    
T  36639948 tgaagctggaaattgtagcttctaattctagaattgttttttacac 36639993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 42982555 - 42982603
Alignment:
Q  99 tgaagctagaaattgtagcttctaattctaaaattaatttttacacaca 147  Q
    ||||||||||||||||||||| | |||| | |||| |||||||||||||    
T  42982555 tgaagctagaaattgtagcttttgattccagaattgatttttacacaca 42982603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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