View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_47 (Length: 237)
Name: NF2086_low_47
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_47 |
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| [»] scaffold0347 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 13385357 - 13385470
Alignment:
| Q |
21 |
attcttttccccttccgacggagctcatttcaaatccgccagcaataaatccaacagcttcgccgccgtcaacaaatacaacagcttcgtcgccgtcgtg |
120 |
Q |
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|||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13385357 |
attcttttcctcttccaacggagctcgtttcaaatccgccatcaataaatccaacagcttcgccgccgtcaacaaatacaacagcttcgtcgccgtcgtg |
13385456 |
T |
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| Q |
121 |
acgctcttaaccac |
134 |
Q |
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| T |
13385457 |
atgctcttaaccac |
13385470 |
T |
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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 25065700 - 25065586
Alignment:
| Q |
21 |
attcttttccccttccgacggagctcatttcaaatccgccagcaataaatccaacagcttcgccgccgtcaacaaatacaacagcttcgtcgccgtcgtg |
120 |
Q |
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|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
25065700 |
attcttttcctcttccgacggagctcgtttaaaatccgccagcaataaatccaacagcttcgccgccgtcaacaaatacaacagctttgccgccgtcgtg |
25065601 |
T |
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| Q |
121 |
acgctcttaaccacc |
135 |
Q |
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| T |
25065600 |
atgctcttaaccacc |
25065586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0347 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0347
Description:
Target: scaffold0347; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 14355 - 14241
Alignment:
| Q |
21 |
attcttttccccttccgacggagctcatttcaaatccgccagcaataaatccaacagcttcgccgccgtcaacaaatacaacagcttcgtcgccgtcgtg |
120 |
Q |
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| T |
14355 |
attcttttcctcttccaatagagctcgtttataatccgccagcaataaatccaacagctccgccgccgtcaacaaataccacagcttcgtcgccgtcgtg |
14256 |
T |
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| Q |
121 |
acgctcttaaccacc |
135 |
Q |
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| T |
14255 |
atgctcttaaccacc |
14241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 35712838 - 35712769
Alignment:
| Q |
21 |
attcttttccccttccgacggagctcatttcaaatccgccagcaataaatccaacagcttcgccgccgtc |
90 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35712838 |
attcttttcctcttccgacggagctcgtttcaaatccgccagcaataaatccaacagcttcgtcgccgtc |
35712769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 35712792 - 35712751
Alignment:
| Q |
94 |
aaatacaacagcttcgtcgccgtcgtgacgctcttaaccacc |
135 |
Q |
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|||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
35712792 |
aaatccaacagcttcgtcgccgtcgtgatgctctttaccacc |
35712751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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