View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_low_48 (Length: 234)

Name: NF2086_low_48
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_low_48
NF2086_low_48
[»] chr5 (2 HSPs)
chr5 (15-101)||(20836636-20836722)
chr5 (15-101)||(20810281-20810367)
[»] chr8 (1 HSPs)
chr8 (33-100)||(31174026-31174093)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 20836722 - 20836636
Alignment:
Q  15 ttgtcatgattttagttttccccaatgcaacactgtgaatcttctgttttatttcaaggagatctaaaagaagttgttcttgtaaag 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20836722 ttgtcatgattttagttttccccaatgcaatactgtgaatcttctgttttatttcaaggagatctaaaagaagttgttcttgtaaag 20836636  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 20810367 - 20810281
Alignment:
Q  15 ttgtcatgattttagttttccccaatgcaacactgtgaatcttctgttttatttcaaggagatctaaaagaagttgttcttgtaaag 101  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  20810367 ttgtcatgattttatttttccccaatgcaacaccatgaatcttctgctttatttcaaagagatctaaaagaagttgtttttgtaaag 20810281  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 31174093 - 31174026
Alignment:
Q  33 tccccaatgcaacactgtgaatcttctgttttatttcaaggagatctaaaagaagttgttcttgtaaa 100  Q
    ||||||||||||  || |||||||  ||||||||||  |||||||||||||||||||||| |||||||    
T  31174093 tccccaatgcaatgctatgaatctcttgttttatttgcaggagatctaaaagaagttgttgttgtaaa 31174026  T

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