View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_low_53 (Length: 218)

Name: NF2086_low_53
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_low_53
NF2086_low_53
[»] chr3 (41 HSPs)
chr3 (51-218)||(34555007-34555174)
chr3 (1-74)||(42098425-42098498)
chr3 (1-74)||(29455506-29455579)
chr3 (1-74)||(29720583-29720656)
chr3 (1-74)||(900886-900959)
chr3 (1-74)||(16434655-16434728)
chr3 (1-74)||(34263502-34263575)
chr3 (1-74)||(34555339-34555412)
chr3 (1-74)||(46866531-46866604)
chr3 (1-76)||(29793174-29793249)
chr3 (1-76)||(50673865-50673940)
chr3 (1-74)||(12948228-12948301)
chr3 (1-74)||(34669796-34669869)
chr3 (1-76)||(14750856-14750931)
chr3 (1-76)||(49076222-49076297)
chr3 (1-75)||(38878275-38878349)
chr3 (1-74)||(48927600-48927673)
chr3 (1-70)||(53274797-53274866)
chr3 (1-76)||(29444849-29444924)
chr3 (1-68)||(38833517-38833584)
chr3 (1-71)||(20144723-20144793)
chr3 (1-74)||(9484784-9484857)
chr3 (1-66)||(12250491-12250556)
chr3 (1-74)||(28958797-28958870)
chr3 (1-74)||(49818945-49819018)
chr3 (1-49)||(36178959-36179007)
chr3 (1-47)||(32961434-32961480)
chr3 (1-74)||(2643068-2643141)
chr3 (1-74)||(4228986-4229059)
chr3 (9-74)||(9997678-9997743)
chr3 (9-74)||(10228527-10228592)
chr3 (1-49)||(43399014-43399062)
chr3 (1-76)||(4945647-4945722)
chr3 (1-75)||(29809532-29809606)
chr3 (1-74)||(4465069-4465142)
chr3 (9-74)||(10106182-10106247)
chr3 (1-74)||(26759666-26759739)
chr3 (1-74)||(34680370-34680443)
chr3 (1-70)||(36364566-36364634)
chr3 (1-77)||(1778549-1778624)
chr3 (1-49)||(36594241-36594289)
[»] chr5 (31 HSPs)
chr5 (1-74)||(9936691-9936764)
chr5 (1-77)||(14607358-14607434)
chr5 (1-76)||(1780946-1781021)
chr5 (1-76)||(31190978-31191053)
chr5 (1-75)||(20023048-20023122)
chr5 (1-74)||(20040218-20040291)
chr5 (1-74)||(30721488-30721561)
chr5 (1-77)||(14057896-14057972)
chr5 (1-74)||(1831538-1831611)
chr5 (1-74)||(19344502-19344575)
chr5 (1-74)||(40317005-40317078)
chr5 (1-75)||(41262931-41263005)
chr5 (1-74)||(14633195-14633268)
chr5 (1-74)||(41410463-41410536)
chr5 (1-76)||(1098363-1098438)
chr5 (1-74)||(13548401-13548474)
chr5 (1-74)||(27675728-27675801)
chr5 (1-74)||(30351874-30351947)
chr5 (1-49)||(33402419-33402467)
chr5 (1-74)||(10465098-10465171)
chr5 (9-74)||(26801904-26801969)
chr5 (9-74)||(26809454-26809519)
chr5 (9-74)||(26824481-26824546)
chr5 (1-74)||(27674405-27674478)
chr5 (1-54)||(30211564-30211617)
chr5 (1-71)||(34170017-34170087)
chr5 (1-74)||(1831252-1831325)
chr5 (1-74)||(40316719-40316792)
chr5 (9-74)||(40796875-40796940)
chr5 (1-74)||(41042640-41042713)
chr5 (1-74)||(41410749-41410822)
[»] chr6 (20 HSPs)
chr6 (1-76)||(16969567-16969642)
chr6 (1-79)||(6142309-6142387)
chr6 (1-74)||(29514834-29514907)
chr6 (1-75)||(2397958-2398032)
chr6 (1-74)||(995751-995824)
chr6 (1-74)||(2667132-2667205)
chr6 (1-74)||(17496135-17496208)
chr6 (1-77)||(2913085-2913161)
chr6 (1-76)||(6188461-6188536)
chr6 (1-75)||(2141756-2141830)
chr6 (1-74)||(24798353-24798426)
chr6 (1-74)||(24825353-24825426)
chr6 (8-74)||(9023035-9023101)
chr6 (1-71)||(32541287-32541357)
chr6 (1-74)||(2656477-2656550)
chr6 (1-74)||(33347944-33348017)
chr6 (1-71)||(30699449-30699520)
chr6 (1-74)||(35117464-35117537)
chr6 (42-74)||(28483211-28483243)
chr6 (42-74)||(29795624-29795656)
[»] chr1 (31 HSPs)
chr1 (1-76)||(10100318-10100393)
chr1 (1-74)||(10124297-10124370)
chr1 (1-74)||(44741531-44741604)
chr1 (1-69)||(7075142-7075210)
chr1 (1-76)||(5606196-5606271)
chr1 (1-74)||(26544056-26544129)
chr1 (1-74)||(45299507-45299580)
chr1 (1-74)||(2138836-2138909)
chr1 (1-74)||(8250650-8250723)
chr1 (1-74)||(6017256-6017329)
chr1 (1-76)||(44240707-44240782)
chr1 (1-68)||(52749469-52749536)
chr1 (1-74)||(5945953-5946026)
chr1 (1-74)||(23393420-23393493)
chr1 (1-74)||(31651708-31651781)
chr1 (1-74)||(36035874-36035947)
chr1 (9-76)||(41855527-41855594)
chr1 (1-74)||(38786753-38786826)
chr1 (1-63)||(43452983-43453045)
chr1 (1-74)||(26476816-26476889)
chr1 (1-67)||(1821443-1821509)
chr1 (1-75)||(8048554-8048628)
chr1 (1-74)||(5117241-5117314)
chr1 (1-74)||(40058774-40058847)
chr1 (1-74)||(41414391-41414464)
chr1 (1-74)||(48389255-48389328)
chr1 (1-76)||(12685734-12685809)
chr1 (1-76)||(28490348-28490423)
chr1 (1-47)||(23337994-23338040)
chr1 (1-74)||(44963479-44963552)
chr1 (2-74)||(29253627-29253699)
[»] chr8 (28 HSPs)
chr8 (1-75)||(761738-761812)
chr8 (1-74)||(14378487-14378560)
chr8 (1-75)||(38842351-38842425)
chr8 (1-74)||(21132728-21132801)
chr8 (1-74)||(30464620-30464693)
chr8 (1-67)||(4326926-4326992)
chr8 (1-74)||(23437613-23437686)
chr8 (1-74)||(28583102-28583175)
chr8 (1-74)||(29708749-29708822)
chr8 (1-77)||(23547256-23547332)
chr8 (1-74)||(25691397-25691470)
chr8 (8-74)||(44887515-44887581)
chr8 (1-74)||(42149950-42150023)
chr8 (1-74)||(43049069-43049142)
chr8 (1-73)||(37094320-37094392)
chr8 (1-69)||(44040013-44040081)
chr8 (1-75)||(38036657-38036731)
chr8 (1-59)||(43184593-43184651)
chr8 (1-74)||(15870363-15870436)
chr8 (1-74)||(27302050-27302123)
chr8 (1-74)||(44947193-44947266)
chr8 (1-77)||(44362109-44362185)
chr8 (8-75)||(11756973-11757040)
chr8 (1-75)||(8496685-8496759)
chr8 (1-74)||(14583721-14583794)
chr8 (1-74)||(29616126-29616199)
chr8 (1-74)||(11538877-11538950)
chr8 (53-81)||(23249092-23249120)
[»] chr4 (34 HSPs)
chr4 (1-75)||(46608402-46608476)
chr4 (1-74)||(48380944-48381017)
chr4 (1-76)||(39332630-39332705)
chr4 (1-76)||(43447353-43447428)
chr4 (1-74)||(3708441-3708514)
chr4 (1-74)||(28914556-28914629)
chr4 (1-74)||(31152849-31152922)
chr4 (1-81)||(10385036-10385116)
chr4 (1-74)||(8525218-8525291)
chr4 (1-89)||(39171146-39171235)
chr4 (1-74)||(40411410-40411483)
chr4 (1-74)||(48652660-48652733)
chr4 (1-74)||(55631677-55631750)
chr4 (1-75)||(51306035-51306109)
chr4 (1-74)||(37667576-37667649)
chr4 (1-75)||(43047575-43047649)
chr4 (1-77)||(29821238-29821314)
chr4 (1-74)||(6520623-6520696)
chr4 (1-74)||(28988196-28988269)
chr4 (1-74)||(37164205-37164278)
chr4 (1-77)||(1377996-1378072)
chr4 (9-74)||(2805973-2806038)
chr4 (1-74)||(31657159-31657232)
chr4 (1-74)||(39376670-39376743)
chr4 (1-74)||(44210337-44210410)
chr4 (1-76)||(51716719-51716794)
chr4 (1-71)||(1981186-1981256)
chr4 (1-75)||(28898872-28898946)
chr4 (1-74)||(4271816-4271889)
chr4 (1-74)||(17492855-17492928)
chr4 (9-74)||(23605704-23605769)
chr4 (1-74)||(24505699-24505772)
chr4 (1-74)||(47833946-47834019)
chr4 (9-74)||(50685116-50685181)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-74)||(5564-5637)
[»] chr7 (20 HSPs)
chr7 (1-74)||(35693633-35693706)
chr7 (1-74)||(36820064-36820137)
chr7 (1-74)||(38069239-38069312)
chr7 (1-74)||(40232415-40232488)
chr7 (1-80)||(32345580-32345659)
chr7 (1-74)||(16806949-16807022)
chr7 (1-74)||(25273820-25273893)
chr7 (1-74)||(27621098-27621171)
chr7 (1-74)||(35265636-35265709)
chr7 (3-73)||(18756779-18756848)
chr7 (1-75)||(26651050-26651124)
chr7 (1-74)||(48448706-48448779)
chr7 (1-63)||(30462035-30462097)
chr7 (1-74)||(32972138-32972211)
chr7 (20-74)||(29247834-29247888)
chr7 (1-74)||(5842306-5842379)
chr7 (1-74)||(25571495-25571568)
chr7 (1-74)||(47713235-47713308)
chr7 (9-49)||(9173164-9173204)
chr7 (1-69)||(41007765-41007833)
[»] chr2 (24 HSPs)
chr2 (1-74)||(41319726-41319799)
chr2 (1-77)||(42754154-42754230)
chr2 (1-76)||(10333378-10333453)
chr2 (1-75)||(40471924-40471998)
chr2 (1-74)||(31603219-31603292)
chr2 (1-74)||(41437020-41437093)
chr2 (1-74)||(5096436-5096509)
chr2 (1-74)||(7724412-7724485)
chr2 (1-76)||(20917727-20917802)
chr2 (1-74)||(4137597-4137670)
chr2 (1-74)||(8373622-8373695)
chr2 (1-78)||(11277722-11277799)
chr2 (1-76)||(20682830-20682905)
chr2 (1-74)||(1748974-1749047)
chr2 (1-74)||(38963983-38964056)
chr2 (1-64)||(37987748-37987811)
chr2 (1-74)||(37317064-37317137)
chr2 (1-75)||(41575750-41575824)
chr2 (1-74)||(6729905-6729978)
chr2 (9-74)||(16125885-16125950)
chr2 (1-71)||(7601202-7601272)
chr2 (9-74)||(16333675-16333740)
chr2 (1-74)||(16646434-16646507)
chr2 (1-74)||(25627211-25627284)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-74)||(184154-184227)
[»] scaffold0283 (1 HSPs)
scaffold0283 (1-74)||(3171-3244)
[»] scaffold0500 (1 HSPs)
scaffold0500 (1-75)||(479-553)
[»] scaffold0195 (1 HSPs)
scaffold0195 (1-74)||(48-121)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 34555174 - 34555007
Alignment:
Q  51 acttattaagggacggagggagtaattaattagttgttagaaatgttagcgggcaagtttaacccttatgttcctccatccaaactaccttaatactcct 150  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34555174 acttattgcgggacggagggagtaattaattagttgttagaaatgttagcgggcaagtttaacccttatgttcctccatccaaactaccttaatactcct 34555075  T
Q  151 acttgaatagttatttttgtattgttactttttgagtttggagtaatgtcactcatctaagttatttt 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34555074 acttgaatagttatttttgaattgttactttttgagtttggagtaatgtcactcatctaagttatttt 34555007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42098498 - 42098425
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42098498 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 42098425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29455579 - 29455506
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  29455579 atttaaactcaaaattacgcattggtatgcgtaaatgggtcaactgtgtcacttattaagggacggagggagta 29455506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 29720583 - 29720656
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  29720583 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaaggagta 29720656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 900959 - 900886
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  900959 atttaaactcaaaattacgcattggtatgcgtaatttggtcaactgtgtcacttattaagggacggaggaagta 900886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16434728 - 16434655
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  16434728 atttaaactcaaaattacgcattggtatacgtaattgggtcaactgtgtcacttattaagggacgaagggagta 16434655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34263575 - 34263502
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  34263575 atttaaactcaaaattacgcattggtatgcgtaattggatcaactgtatcacttattaagggacggagggagta 34263502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34555339 - 34555412
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  34555339 atttaaactcaaaattacgcattggtatgcataattgggccaactgtgtcacttattaagggacggagggagta 34555412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46866531 - 46866604
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  46866531 atttaaactcaaaattacgcattggtatgcgtaattgggtcaattgtatcacttattaagggacggagggagta 46866604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29793249 - 29793174
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  29793249 atttaaactcaaaattatgcattggtatgcgtaattgggttaactgtgtcacttattaagggacgaagggagtaat 29793174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50673865 - 50673940
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| |||||||||||||||    
T  50673865 atttaaactcaaaattacgcattggtatgcgtaattggatcaactgtgtcacttgttaagtgacggagggagtaat 50673940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12948228 - 12948301
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  12948228 atttaaactcaaaattatgcattggtatgcgtaattggatcaactgtgtcacttattaagagacggagggagta 12948301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34669796 - 34669869
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||| ||||||||| ||||||||||||||    
T  34669796 atttaaactcaaaattacgcattgatatgtataattggatcaactgtgtcacttattaaaggacggagggagta 34669869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14750931 - 14750856
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| ||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  14750931 atttaaactcaaaattacgcattggtatgcgtaactggatcaactgtgtcatgtattaagggacggagggagtaat 14750856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 49076297 - 49076222
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| ||||||||||||||||||||   | ||||||||||| ||||||||||||||    
T  49076297 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactagatcacttattaaggaacggagggagtaat 49076222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38878349 - 38878275
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||  || ||||||||||||||||||| |||||    
T  38878349 atttaaactcaaaattacgcattgatatacgtaattggatcaactaggtcacttattaagggacggaggaagtaa 38878275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48927673 - 48927600
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||  || ||||||||||||| ||||||||||    
T  48927673 atttaaactcaaaattacgcattggtatgcgtaattggatcaactaggtcacttattaagggatggagggagta 48927600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 53274866 - 53274797
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggaggg 70  Q
    |||||||||||||||||||||||| ||||||||||||||||||||   | ||||||||||||||||||||    
T  53274866 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactagatcacttattaagggacggaggg 53274797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29444924 - 29444849
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    ||||||| |||||||||||||||| |||  |||||| |||||||||||| |||||||||| |||||||||||||||    
T  29444924 atttaaattcaaaattacgcattggtatatgtaatttggtcaactgtgtcacttattaagagacggagggagtaat 29444849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38833584 - 38833517
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggag 68  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||| ||| ||||||||||||||||||    
T  38833584 atttaaactcaaaattacgcattaatatgtgtaaatgggtcaactatgtcacttattaagggacggag 38833517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 20144793 - 20144723
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggaggga 71  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||   | |||||||||||||||||||||    
T  20144793 atttaaactcaaaattacgcattggtatgcgtaattggatcaactagatcacttattaagggacggaggga 20144723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9484784 - 9484857
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  || ||||||||||| || |||| ||||    
T  9484784 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactaggtcacttattaaggaactgaggaagta 9484857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12250491 - 12250556
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacgg 66  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||   | ||||||||||||||||    
T  12250491 atttaaactcaaaattacgcattggtatgcgtaattgggtcagctagatcacttattaagggacgg 12250556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28958870 - 28958797
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| ||||| | ||||||||| | || |||||||| |  |||||||||||||||||||||    
T  28958870 atttaaactcaaaattatgcattaaaatgcgtaatggagttaactgtgtcatgtattaagggacggagggagta 28958797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 49818945 - 49819018
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| |||| |||| | ||||||||||| |  |||||||||||||||||||||    
T  49818945 atttaagctcaaaattatgcattgaaatgcataatggagtcaactgtgtcatgtattaagggacggagggagta 49819018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36179007 - 36178959
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgt 49  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  36179007 atttaaactcaaaattacgcattaatatacgtaattggatcaactgtgt 36178959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32961434 - 32961480
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgt 47  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||||||    
T  32961434 atttaaactcaaaattatgcattgacatgcgtaatagggtcaactgt 32961480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2643141 - 2643068
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||  ||||||||| | ||||||| ||| |  |||||||||||||||||||||    
T  2643141 atttaagctcaaaattatgcattggcatgcgtaatggagtcaactatgtcatgtattaagggacggagggagta 2643068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4229059 - 4228986
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| ||||||  ||||||||| | |||||| |||| |  |||||||||| ||||||||||    
T  4229059 atttaaactcaaaattatgcattggaatgcgtaatggagtcaaccgtgtcatgtattaagggatggagggagta 4228986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 9997743 - 9997678
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| ||| ||||||| |||||||||  |||||||||||| |  |||||||||||||||||||||    
T  9997743 tcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 9997678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 10228592 - 10228527
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| ||| ||||||| |||||||||  |||||||||||| |  |||||||||||||||||||||    
T  10228592 tcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 10228527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43399014 - 43399062
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgt 49  Q
    ||||||||||||||||| | ||||||||||||||| || ||||||||||    
T  43399014 atttaaactcaaaattatgtattgatatgcgtaataggatcaactgtgt 43399062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4945722 - 4945647
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||| |||||||||| ||||||  |||||| || | ||||| ||||| |  |||||||||||||||||||||||    
T  4945722 atttaagctcaaaattatgcattggaatgcgtgatggagtcaattgtgtcatgtattaagggacggagggagtaat 4945647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29809532 - 29809606
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||| |||||||||| ||||||  ||||||||| | || |||||||| |  ||||||||||||||| ||||||    
T  29809532 atttaagctcaaaattatgcattggaatgcgtaatggagttaactgtgtcatgtattaagggacggagagagtaa 29809606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4465069 - 4465142
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| |||| |||| | || |||||||| |  |||||| ||||||||||||||    
T  4465069 atttaagctcaaaattatgcattgaaatgcataatggagttaactgtgtcatatattaaaggacggagggagta 4465142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 10106247 - 10106182
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| ||| ||||||| |||||||||   ||||||||||| |  |||||||||||||||||||||    
T  10106247 tcaaagttatgcattgacatgcgtaataaagtcaactgtgtcaagtattaagggacggagggagta 10106182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26759666 - 26759739
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||   ||||| |||| |||| | ||||||||||| |  |||||| ||||||||||||||    
T  26759666 atttaaactcaaaattatatattgaaatgcataatagagtcaactgtgtcatgtattaaaggacggagggagta 26759739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34680370 - 34680443
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| ||||||||||  |||||  || |||||| | ||||||||||| |  |||||||||||||||||||||    
T  34680370 atttaagctcaaaattatacattggaatacgtaatagagtcaactgtgtcatgtattaagggacggagggagta 34680443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36364634 - 36364566
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggaggg 70  Q
    |||||| ||||||||||  |||||| ||||||||| | ||||||||||| | ||||||||| ||||||||    
T  36364634 atttaagctcaaaattatacattgaaatgcgtaatggagtcaactgtgtta-ttattaaggaacggaggg 36364566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1778549 - 1778624
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||| |||||||||| ||||||  || |||||| | ||||||||||| |  || |||||||||||||||||||||    
T  1778549 atttaagctcaaaattatgcattggaatacgtaatggagtcaactgtgtcatgta-taagggacggagggagtaatt 1778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36594289 - 36594241
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgt 49  Q
    |||||| |||||||||| ||||||| |||||||||  ||||||||||||    
T  36594289 atttaagctcaaaattatgcattgacatgcgtaataaggtcaactgtgt 36594241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9936764 - 9936691
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9936764 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 9936691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14607434 - 14607358
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14607434 atttaaactcaaaattacgcattagtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtaatt 14607358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1781021 - 1780946
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1781021 atttaaactcaaaattacgcattggtatgagtaattgggtcaactgtgtcacttattaagggacggagggagtaat 1780946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31191053 - 31190978
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  31191053 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtatcacttattaagggacggagggagtaat 31190978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 20023048 - 20023122
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  20023048 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattgagggacggagggagtaa 20023122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 20040291 - 20040218
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20040291 atttaaattcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 20040218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30721561 - 30721488
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30721561 atttaaactcaaatttacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 30721488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14057896 - 14057972
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||||||||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  14057896 atttaaactcaaaattacgcattggtatgcataattgggtcaattgtgtcacttattaagggacggagggagtaatt 14057972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1831538 - 1831611
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  1831538 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaaaggaaggagggagta 1831611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19344575 - 19344502
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||    
T  19344575 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcatttattaagagacggagggagta 19344502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 40317005 - 40317078
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  40317005 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaaaggaaggagggagta 40317078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 41263005 - 41262931
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  41263005 atttaaactcaaatttacgcattggtatgcgtaattgggtcaattgtgtcacttattaagagacggagggagtaa 41262931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14633195 - 14633268
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||| |||||    
T  14633195 atttaaactcaaaattacgcattggtatgcgtaattaggtcaactgtgtcacttattaaggggcggagagagta 14633268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41410536 - 41410463
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||| ||||||||||    
T  41410536 atttaaactcaaaattacgcattggtatacgtaattgggtcaactgtgtcacttattaaaggaaggagggagta 41410463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1098363 - 1098438
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  || |||| |||||||||||||| ||||||    
T  1098363 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactaggtcacttgttaagggacggaggaagtaat 1098438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13548401 - 13548474
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| || ||||||    
T  13548401 atttaaactcaaaattacgtattgatatgcgtaattgagtcaattgtgtcacttattaagggacagatggagta 13548474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27675728 - 27675801
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| ||||||||| | ||||||||||| | ||||||||||||||||||||||    
T  27675728 atttaagctcaaaattatgcattgaaatgcgtaatggagtcaactgtgtcatttattaagggacggagggagta 27675801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30351947 - 30351874
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||||  || ||||||||||||||||| ||||||    
T  30351947 atttaaactcaaaattacgcattggtatacgtaatttggtcaactaggtcacttattaagggacggatggagta 30351874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33402467 - 33402419
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgt 49  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  33402467 atttaaactcaaaattacacattgatatgcgtaattgggtctactgtgt 33402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10465171 - 10465098
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| |||| |||| | ||||||||||| |  |||||||||| ||||||||||    
T  10465171 atttaagctcaaaattatgcattgaaatgcataatggagtcaactgtgtcatgtattaagggatggagggagta 10465098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 26801969 - 26801904
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| ||| ||||||| |||||||||  |||||||||||| |  |||||||||||||||||||||    
T  26801969 tcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 26801904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 26809519 - 26809454
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| ||| ||||||| |||||||||  |||||||||||| |  |||||||||||||||||||||    
T  26809519 tcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 26809454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 26824546 - 26824481
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| ||| ||||||| |||||||||  |||||||||||| |  |||||||||||||||||||||    
T  26824546 tcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 26824481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27674405 - 27674478
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| ||||||| |||||||||  |||||||||||| |  ||||||||||| |||||||||    
T  27674405 atttaagctcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggaccgagggagta 27674478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30211617 - 30211564
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaactt 54  Q
    |||||||||||||||||||||||| ||| | ||||||| |||||||||| ||||    
T  30211617 atttaaactcaaaattacgcattggtattcctaattggatcaactgtgtcactt 30211564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 34170017 - 34170087
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggaggga 71  Q
    |||||| ||||||||||  ||||   ||||||||||| ||||||||||| |  ||||||||||||||||||    
T  34170017 atttaagctcaaaattatacattagaatgcgtaattgagtcaactgtgtcatgtattaagggacggaggga 34170087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1831252 - 1831325
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| ||||||| |||||||||   |||||||| || |  |||||||||||||||||||||    
T  1831252 atttaagctcaaagttatgcattgacatgcgtaataaagtcaactgggtcaagtattaagggacggagggagta 1831325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 40316719 - 40316792
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| ||||||| |||||||||   |||||||| || |  |||||||||||||||||||||    
T  40316719 atttaagctcaaagttatgcattgacatgcgtaataaagtcaactgggtcaagtattaagggacggagggagta 40316792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 40796940 - 40796875
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| ||| ||||||| |||||||||  |||||||||||| |  ||||||||||| |||||||||    
T  40796940 tcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacagagggagta 40796875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41042713 - 41042640
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| || |||||| | |||| |||||| |  |||||||||||||| ||||||    
T  41042713 atttaagctcaaaattatgcattgaaatacgtaatggagtcagctgtgtcatgtattaagggacggatggagta 41042640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41410822 - 41410749
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| ||||||| |||||||||   |||||||| || |  |||||||||||||||||||||    
T  41410822 atttaagctcaaagttatgcattgacatgcgtaataaagtcaactgggtcaagtattaagggacggagggagta 41410749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 16969567 - 16969642
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16969567 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtaat 16969642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6142387 - 6142309
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaattaa 79  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  6142387 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtatttaa 6142309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29514907 - 29514834
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  29514907 atttaaactcaaaattacgcattgatatgcgtaattgggtcaattgtgtcacttattaagggacggagggagta 29514834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2397958 - 2398032
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2397958 atttaaacttaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtaa 2398032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 995751 - 995824
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  995751 atttaaactcaaaattactcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 995824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2667205 - 2667132
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  2667205 atttaaactcaaaattacgcattggtatgcgtaattaggtcaactgtgtcacttattaagggacggagggagta 2667132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 17496208 - 17496135
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  17496208 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggatggagggagta 17496135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2913085 - 2913161
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||||||    
T  2913085 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactaggtcacttattaagggacggagggagtaatt 2913161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6188536 - 6188461
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  6188536 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaaggaacggagggaataat 6188461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2141756 - 2141830
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| | |||||||| ||||||||||||||    
T  2141756 atttaaactcaaaattacgcattggtatacgtaattgggtcaactgtgtcatttattaagagacggagggagtaa 2141830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24798426 - 24798353
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  24798426 atttaaactcaaaattacgcattggtatgcgtaattgaatcaactgtgtcacttattaaggaacggagggagta 24798353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24825353 - 24825426
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||  | ||||||||||||||||||||||||    
T  24825353 atttaaactcaaaattacacattgatatgcgtaattgagtcaactggatcacttattaagggacggagggagta 24825426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 9023035 - 9023101
Alignment:
Q  8 ctcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||| ||||    
T  9023035 ctcaaaattacgcattggtatgcgtaattggatcaactgtgtcacttgttaagggacggaggaagta 9023101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32541357 - 32541287
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggaggga 71  Q
    ||||||||||||||||||||||| |||||||||||||||||||||   | ||||||||| |||||||||||    
T  32541357 atttaaactcaaaattacgcattaatatgcgtaattgggtcaactagatcacttattaaaggacggaggga 32541287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2656550 - 2656477
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||| ||||||    
T  2656550 atttaaacttaaaattacgcattggtatgcgtaatttggtcaactgtgtcacttattaaagaacggaaggagta 2656477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33348017 - 33347944
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| |  ||||||| |||||||| ||||    
T  33348017 atttaaactcaaaattatgcattaatatgcgtaattgggtcaactgtgtcatgtattaagtgacggaggaagta 33347944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30699449 - 30699520
Alignment:
Q  1 atttaaactcaaaattacgcattga-tatgcgtaattgggtcaactgtgtaacttattaagggacggaggga 71  Q
    ||||||||||||||||||||||||  ||| ||||||| |||||||||||| ||||||||||||| |||||||    
T  30699449 atttaaactcaaaattacgcattgggtatacgtaatttggtcaactgtgtcacttattaagggatggaggga 30699520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35117464 - 35117537
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| |||||  |||||||||||||||||||||||| |  ||||||| |||||||||||||    
T  35117464 atttaagctcaaaattatgcattagtatgcgtaattgggtcaactgtgtcatgtattaagtgacggagggagta 35117537  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 28483211 - 28483243
Alignment:
Q  42 aactgtgtaacttattaagggacggagggagta 74  Q
    |||||||| ||||||||||||||||||||||||    
T  28483211 aactgtgtcacttattaagggacggagggagta 28483243  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 29795624 - 29795656
Alignment:
Q  42 aactgtgtaacttattaagggacggagggagta 74  Q
    |||||||| ||||||||||||||||||||||||    
T  29795624 aactgtgtcacttattaagggacggagggagta 29795656  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10100393 - 10100318
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  10100393 atttaaactcaaaattacgcattgatatgcgtaattaggtcaactgtgtcacttattaagggacggagggagtaat 10100318  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10124297 - 10124370
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  10124297 atttaaactcaaaattacgcattgatatgcgtaattgagtcaactgtgtcacttattaagggacggagggagta 10124370  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44741531 - 44741604
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  44741531 atttaaactcaaaattacgcattgatatgcgtaattggatcaactgtgtcacttattaagggacggagggagta 44741604  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7075210 - 7075142
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagg 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7075210 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtcacttattaagggacggagg 7075142  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5606271 - 5606196
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5606271 atttaaactcaaaattaagcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtaat 5606196  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26544056 - 26544129
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  26544056 atttaaactcaaaattacgcattgatatgcgtaatcgggtcaactgtgtcacttattaaaggacggagggagta 26544129  T

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Target: chr1; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45299507 - 45299580
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  45299507 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggaagta 45299580  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2138909 - 2138836
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  2138909 atttaaactcaaaattacacattggtatgcgtaattgggtcaactgtgttacttattaaaggacggagggagta 2138836  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8250723 - 8250650
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  8250723 atttaaactcaaaattatgcattggtatacgtaattaggtcaactgtgtcacttattaagggacggagggagta 8250650  T

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Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6017329 - 6017256
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||| | |||||||||| |||||||||||||    
T  6017329 atttaaactcaaaattacgcattggtatgcgtaatttgatcaactgtatgacttattaagagacggagggagta 6017256  T

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Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44240707 - 44240782
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||| |||||||||| ||||||| ||||||||||| ||| ||||||| | ||||||||||||||||||||||||    
T  44240707 atttaagctcaaaattatgcattgaaatgcgtaattgagtccactgtgtcatttattaagggacggagggagtaat 44240782  T

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Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 52749469 - 52749536
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggag 68  Q
    |||||||||||||||||||||||| |||| |||||||||||||||  || ||||||||||||||||||    
T  52749469 atttaaactcaaaattacgcattggtatgtgtaattgggtcaactaggtcacttattaagggacggag 52749536  T

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Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5945953 - 5946026
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   | |||||||||| |||||||||||||    
T  5945953 atttaaactcaaaattacgcattggtatgcgtaattaggtcaactagatcacttattaagagacggagggagta 5946026  T

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Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 23393420 - 23393493
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||  ||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  23393420 atttaagctcaaaattatgcattggcatgcgtaattgagtcaactgtgtcatttattaagggacggagggagta 23393493  T

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Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31651781 - 31651708
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| |||||| |||||||||| ||||||||||||| | |||||| |||||||||||||||    
T  31651781 atttaagctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggacggagggagta 31651708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36035874 - 36035947
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||||  || ||||||||||||||||||| ||||    
T  36035874 atttaaacttaaaattacacattggtatgcgtaattgggtcaactaggtcacttattaagggacggaggaagta 36035947  T

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Target: chr1; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 41855594 - 41855527
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    ||||||||| ||||||| ||||||||| | ||||||||||| | ||||||||||||||||||||||||    
T  41855594 tcaaaattatgcattgaaatgcgtaatggagtcaactgtgtcatttattaagggacggagggagtaat 41855527  T

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Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38786826 - 38786753
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| | ||||||||||||||| ||||||| ||||| |  ||||| |||||||||||||||    
T  38786826 atttaaactcaaaattatgtattgatatgcgtaatagggtcaattgtgtcatgtattatgggacggagggagta 38786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43453045 - 43452983
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaaggga 63  Q
    ||||||||||||||||| |||||||||||||||||  |||||||||||| |  ||||||||||    
T  43453045 atttaaactcaaaattatgcattgatatgcgtaataaggtcaactgtgtcaagtattaaggga 43452983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26476889 - 26476816
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| | ||||| |||||||||  |||||||||||| |  |||||||| ||||||||||||    
T  26476889 atttaaactcaaaattatgtattgacatgcgtaataaggtcaactgtgtcaagtattaaggaacggagggagta 26476816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1821509 - 1821443
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacgga 67  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||| |  ||||||| ||||||    
T  1821509 atttaagctcaaaattatgcattggtatacgtaattgggtcaactgtgtcatgtattaagagacgga 1821443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8048628 - 8048554
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||| ||||||| || ||||||  ||||||||| | ||||||||||| |  ||||||||||||||||||||||    
T  8048628 atttaagctcaaaaatatgcattggaatgcgtaatggagtcaactgtgtcatgtattaagggacggagggagtaa 8048554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5117314 - 5117241
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| ||||||| |||||||||  | |||||||||| |  |||||||||||||||||||||    
T  5117314 atttaagctcaaagttatgcattgacatgcgtaataagttcaactgtgtcaagtattaagggacggagggagta 5117241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40058847 - 40058774
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||| ||| ||||||| |||||||||  |||||||||||| |  ||||| | |||||||||||||    
T  40058847 atttaaactcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattatgagacggagggagta 40058774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41414391 - 41414464
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| || |||||||| ||||||||||| |  |||||||||| ||| ||||||    
T  41414391 atttaagctcaaaattatgcattgaaatacgtaattgagtcaactgtgtcatatattaagggatggatggagta 41414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 48389255 - 48389328
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| | || || ||||||||| | ||||||||||| | ||||||| ||||||||||||||    
T  48389255 atttaagctcaaaattatgtatcgaaatgcgtaatggagtcaactgtgtcatttattaaaggacggagggagta 48389328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12685809 - 12685734
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||| |||||||||| ||||||| ||| |||||  |||||||||||| |  |||||  ||||||||||||||||    
T  12685809 atttaagctcaaaattatgcattgacatgtgtaataaggtcaactgtgtcaagtattataggacggagggagtaat 12685734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28490348 - 28490423
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||| |||||||||| ||||||  ||||||||| | |||||||||||    |||||| ||||||||||||||||    
T  28490348 atttaagctcaaaattatgcattggaatgcgtaatggagtcaactgtgtcctgtattaaaggacggagggagtaat 28490423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23337994 - 23338040
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgt 47  Q
    ||||||||||||||||| ||||||| |||||||||  ||||||||||    
T  23337994 atttaaactcaaaattatgcattgacatgcgtaatatggtcaactgt 23338040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 44963552 - 44963479
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| | ||||| |||||||||  |||||||| ||| |  |||||||||||||||||||||    
T  44963552 atttaagctcaaagttatgtattgacatgcgtaataaggtcaactatgtcaagtattaagggacggagggagta 44963479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 29253627 - 29253699
Alignment:
Q  2 tttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| |||||||||| ||||| | |||||||||   ||||||||||| |  |||||||| ||||||||||||    
T  29253627 tttaagctcaaaattatgcattcaaatgcgtaatgaagtcaactgtgtcatgtattaaggaacggagggagta 29253699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 761738 - 761812
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  761738 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtaa 761812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14378560 - 14378487
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14378560 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 14378487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38842351 - 38842425
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||    
T  38842351 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtatcacttattaagggacggagggagtaa 38842425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 21132801 - 21132728
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21132801 atttaaactcaaaattatgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 21132728  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30464620 - 30464693
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  30464620 atttaaactcaaaattacacattgatatgcgtaatttggtcaactgtgtcacttattaagggacggagggagta 30464693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4326992 - 4326926
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacgga 67  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||    
T  4326992 atttaaactcaaaattacacattgatatgcgtaattgggtcaactgtgtcacttattaagagacgga 4326926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23437686 - 23437613
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||| ||||  |||||||||| ||||||||||||||||||||||||    
T  23437686 atttaaactcaaaattacgcattggtatgcgtcattgaatcaactgtgtcacttattaagggacggagggagta 23437613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28583175 - 28583102
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| |  |||||||||||||||||||||    
T  28583175 atttaaactcaaaattacgcattggtatgcgtaactgggtcaactgtgtcatgtattaagggacggagggagta 28583102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 29708749 - 29708822
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||| |||||||  || ||||||||||||||||||||||||    
T  29708749 atttaaactcaaaattacgcattggtatgcgtaattgagtcaactaggtcacttattaagggacggagggagta 29708822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23547256 - 23547332
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||| ||||||||| |||||    
T  23547256 atttaaactcaaaattacgcattggtatgcgtaattaagtcaactgtgtcacttattaaggaacggagggaataatt 23547332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25691470 - 25691397
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||| ||| ||||||||||||||| ||| ||||    
T  25691470 atttaaactcaaaattacacattggtatgcataattgggtcaactatgttacttattaagggacgtaggaagta 25691397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 44887581 - 44887515
Alignment:
Q  8 ctcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||| |||||| |||||||||| ||||||||||||| | |||||| |||||||||||||||    
T  44887581 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggacggagggagta 44887515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42150023 - 42149950
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||  |||||| |||||||||||||  || ||||||||| ||||||| ||||||    
T  42150023 atttaaactcaaaattacgcatttgtatgcgaaattgggtcaactaggtcacttattaaaggacggatggagta 42149950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43049142 - 43049069
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| ||||||||| | ||||||||||| | ||||||||| ||||||||||||    
T  43049142 atttaagctcaaaattatgcattgaaatgcgtaatggagtcaactgtgtcatttattaaggtacggagggagta 43049069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 37094320 - 37094392
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagt 73  Q
    |||||| |||||||||| ||||||| || |||||| | ||||||||||| | |||||||||||||||||||||    
T  37094320 atttaagctcaaaattatgcattgaaatacgtaatggagtcaactgtgtcatttattaagggacggagggagt 37094392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44040013 - 44040081
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagg 69  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||| | |||||| |||| |||||    
T  44040013 atttaaactcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggatggagg 44040081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38036731 - 38036657
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||| |||||| ||| ||||||| |||||||||  |||||||||||| |  ||||||||||||||||||||||    
T  38036731 atttaagctcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagtaa 38036657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43184651 - 43184593
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaa 59  Q
    |||||||||||||||||| ||||||||| ||||| ||| |||||||||| |||||||||    
T  43184651 atttaaactcaaaattacacattgatatacgtaactggatcaactgtgtcacttattaa 43184593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15870363 - 15870436
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||   | | ||||||| ||||| ||||||||    
T  15870363 atttaaactcaaaattacgcattggtatgcataattgggtcaactagatcaattattaaaggacgaagggagta 15870436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27302050 - 27302123
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||| ||| | |  ||||| |||||||||||||||    
T  27302050 atttaaactcaaaattatgcattgacatgcgtaatagggtcaattgtatcatgtattatgggacggagggagta 27302123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44947193 - 44947266
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| |||||| ||||||||||  |||||||||||| |  ||||| |||||||||||||||    
T  44947193 atttaagctcaaaattatgcattggtatgcgtaatatggtcaactgtgtcatgtattatgggacggagggagta 44947266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44362109 - 44362185
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||| |||||||||| ||||||  ||||||||| | ||||||| ||| |  ||||||||||||||||||||||||    
T  44362109 atttaagctcaaaattatgcattggaatgcgtaatggagtcaactttgtcatgtattaagggacggagggagtaatt 44362185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 11756973 - 11757040
Alignment:
Q  8 ctcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||| ||||||  ||||||||| | ||||||||||| |  ||||||||||||||||||||||    
T  11756973 ctcaaaattatgcattggaatgcgtaatggagtcaactgtgtcatgtattaagggacggagggagtaa 11757040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8496759 - 8496685
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||| |||||||||| |||||||||| |||||| ||||||||||| | |  ||||| |||||||||| |||||    
T  8496759 atttaagctcaaaattatgcattgatatacgtaatagggtcaactgtatcatgtattatgggacggaggaagtaa 8496685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14583794 - 14583721
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||  ||||||||| | ||||||| ||| |  |||||||||||||||||||||    
T  14583794 atttaagctcaaaattatgcattggaatgcgtaatagagtcaactatgtcatgtattaagggacggagggagta 14583721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29616199 - 29616126
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| |||| | |||||||||| || |||||||||| |  ||||| |||||||||||||||    
T  29616199 atttaagctcaaaattatgcatcggtatgcgtaataggatcaactgtgtcatgtattatgggacggagggagta 29616126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11538877 - 11538950
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||  ||| ||||| | ||||||| ||| |  |||||||||||||||||||||    
T  11538877 atttaagctcaaaattatgcattggaatgtgtaatggagtcaactatgtcatgtattaagggacggagggagta 11538950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 23249092 - 23249120
Alignment:
Q  53 ttattaagggacggagggagtaattaatt 81  Q
    |||||||||||||||||||||||||||||    
T  23249092 ttattaagggacggagggagtaattaatt 23249120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46608402 - 46608476
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46608402 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtaa 46608476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 48380944 - 48381017
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48380944 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 48381017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39332705 - 39332630
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  39332705 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggggggagtaat 39332630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43447353 - 43447428
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  43447353 atttaaactcaaaattacgcattggtatgcgtaaatgggtcaactgtgtcacttattaagggacggagggagtaat 43447428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3708441 - 3708514
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  3708441 atttaaactcaaaattacgcattggtatgcgtaattgggttaactgtgtcacttattaagggacggagggagta 3708514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28914556 - 28914629
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  28914556 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggatggagta 28914629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31152849 - 31152922
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31152849 atttaaactcaaaattacacattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 31152922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10385036 - 10385116
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaattaatt 81  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||| ||||||    
T  10385036 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactaggtcacttattaagggacggagggagtatttaatt 10385116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8525291 - 8525218
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||||    
T  8525291 atttaaactcaaaattacgcattggtatgcgtaattgggtcaaccgtgtcacttattcagggacggagggagta 8525218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 39171146 - 39171235
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta-attaattagttgtta 89  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||| ||| |||||||||||    
T  39171146 atttaaactcaaaatcacgcattggtatgcgtaattaggtcaactgtatcacttattaagggacggagggagtatattcattagttgtta 39171235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40411483 - 40411410
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  40411483 atttaaactcaaaattacgcattggtatgcgtaaatgggtcaactgtatcacttattaagggacggagggagta 40411410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 48652660 - 48652733
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  48652660 atttaaactcaaaattacacattggtatccgtaattgggtcaactgtgtcacttattaagggacggagggagta 48652733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 55631750 - 55631677
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  55631750 atttaaactcaaaattacgcattggtatacgtaattgggtcaactgtgtcacttattaagggacgaagggagta 55631677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 51306109 - 51306035
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    ||||||||||||||||| ||||||| ||||||||| | ||||||||||| | |||||||||||| ||||||||||    
T  51306109 atttaaactcaaaattatgcattgaaatgcgtaatggagtcaactgtgtcatttattaagggacagagggagtaa 51306035  T

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Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37667649 - 37667576
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||| |||||||  |||||||||||||| |||||||| ||||||||| ||| ||||||||||    
T  37667649 atttaaactcaaaattgcgcattggcatgcgtaattgggttaactgtgtcacttattaaaggatggagggagta 37667576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43047575 - 43047649
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||   | |||||||||||||| ||||||||||    
T  43047575 atttaaactcaaaattacgcatgggtatgcgtaattggatcaactagatcacttattaagggacagagggagtaa 43047649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29821238 - 29821314
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||| |||||||||| |||||| |||||||||| ||||||||||||| |  ||||| ||||||||| ||||||||    
T  29821238 atttaagctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatgtattatgggacggagagagtaatt 29821314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6520623 - 6520696
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| || |||||||| ||||||| ||| | ||||||||||||||||| ||||    
T  6520623 atttaagctcaaaattatgcattgaaatacgtaattgagtcaactttgtcatttattaagggacggaggaagta 6520696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28988269 - 28988196
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||  ||||||||| | ||||||||||| |  |||||||||||||||||||||    
T  28988269 atttaagctcaaaattatgcattggaatgcgtaatggagtcaactgtgtcatgtattaagggacggagggagta 28988196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37164205 - 37164278
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| |||||| |||||||||| ||||||||||||| |  ||||| |||||||||| ||||    
T  37164205 atttaagctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatgtattatgggacggaggaagta 37164278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1377996 - 1378072
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||| |||||||||| ||||||  ||||||||| | ||||||||||| |  |||||||||| |||||||||||||    
T  1377996 atttaagctcaaaattatgcattggaatgcgtaatggagtcaactgtgtcatgtattaagggatggagggagtaatt 1378072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 2806038 - 2805973
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||| ||| ||||||| |||||||||  |||||||||||| |  |||||||||||||||||||||    
T  2806038 tcaaagttatgcattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 2805973  T

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Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31657232 - 31657159
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| |||||||| || ||||||||| | | ||||||||||||| | ||||||    
T  31657232 atttaagctcaaaattatgcattgaaatgcgtaaatgagtcaactgtatcatttattaagggacgaatggagta 31657159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39376743 - 39376670
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||| | ||||||| ||||||||| | ||||||||| | |  |||||||||||||||||||||    
T  39376743 atttaagctcaaaatcatgcattgaaatgcgtaatggagtcaactgtatcatgtattaagggacggagggagta 39376670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44210337 - 44210410
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| ||||||||| | |||||| || | |  |||||||||||||||||||||    
T  44210337 atttaagctcaaaattatgcattgaaatgcgtaatggagtcaaccgtatcatgtattaagggacggagggagta 44210410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 51716719 - 51716794
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||| |||||||||| ||||||| |||| ||||  | |||||| ||| |  |||||||||||||||||||||||    
T  51716719 atttaagctcaaaattatgcattgacatgcataataagctcaactatgtcaaatattaagggacggagggagtaat 51716794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1981256 - 1981186
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggaggga 71  Q
    ||||||||||||||||| ||||||| ||||||||  ||||||||| | | |  ||||| ||||||||||||    
T  1981256 atttaaactcaaaattatgcattgacatgcgtaagagggtcaactttatcatgtattatgggacggaggga 1981186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 28898946 - 28898872
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||| |||||||||| ||||||  |||| |||| | ||||||||| | |  ||||||||||||||||||||||    
T  28898946 atttaagctcaaaattatgcattggaatgcataatggagtcaactgtatcatatattaagggacggagggagtaa 28898872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4271889 - 4271816
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| ||||||  |||||||||  |||||||||||| |  ||||| |||||||||||||||    
T  4271889 atttaagctcaaagttatgcattggcatgcgtaataaggtcaactgtgtcaagtattatgggacggagggagta 4271816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17492855 - 17492928
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| ||||||||||| |||||  ||| |||||||| |  ||||||| |||||||||||||    
T  17492855 atttaagctcaaagttatgcattgatatgtgtaataaggttaactgtgtcaagtattaagagacggagggagta 17492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 23605769 - 23605704
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||| ||||||  ||||||||| | ||||||||||| |  |||||| ||||||||||||||    
T  23605769 tcaaaattatgcattggaatgcgtaatggagtcaactgtgtcatgtattaaaggacggagggagta 23605704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24505699 - 24505772
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| | ||||| |||||||||  |||||||| ||| |  |||||||||||||||||||||    
T  24505699 atttaagctcaaagttatgtattgacatgcgtaataaggtcaactatgtcaagtattaagggacggagggagta 24505772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47834019 - 47833946
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| |||||||||   ||||||||||| |  ||||||| ||| |||||||||    
T  47834019 atttaagctcaaaattatgcattgacatgcgtaataaagtcaactgtgtcaagtattaagagacagagggagta 47833946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 50685116 - 50685181
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||  ||||| |||||||||| ||||||||||||| |  ||||| |||||||| ||||||    
T  50685116 tcaaaattatacattggtatgcgtaatagggtcaactgtgtcaagtattatgggacggatggagta 50685181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5564 - 5637
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5564 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 5637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35693706 - 35693633
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  35693706 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtcacttattaagggacgaagggagta 35693633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36820064 - 36820137
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36820064 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 36820137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38069239 - 38069312
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  38069239 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtcacttattaagggactgagggagta 38069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 40232415 - 40232488
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40232415 atttaaactcaaaattacacattgatatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 40232488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 32345659 - 32345580
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaattaat 80  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  32345659 atttaaactcaaaattacgcattggtatgcgtaattgagtcaactgtgtcacttattaagggacggatggagtaattaat 32345580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16807022 - 16806949
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  16807022 atttaaactcaaaattatgcattggtatgcgtaattgggtcaactgtgtcacttattaagtgacggagggagta 16806949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25273893 - 25273820
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||| |||||    
T  25273893 atttaaactcaaaattacgcattgatatgcgtaattggatcaattgtgtcacttattaagggatggagagagta 25273820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27621171 - 27621098
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  27621171 atttaaactcaaaattacgcattagtatgcgtaattggatcaactgtgtcgcttattaagggacggagggagta 27621098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35265709 - 35265636
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||| |||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  35265709 atttaaattcaaaattacgcattagtatgcgtaattggatcaactgtgtcacttattaagggacggatggagta 35265636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 18756779 - 18756848
Alignment:
Q  3 ttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagt 73  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||| |  ||||| ||||||||||||||    
T  18756779 ttaaactcaaaattatgcattgatatgcgtaa-taggtcaactgtgtcatgtattatgggacggagggagt 18756848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26651124 - 26651050
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||| |||||||||| |  ||| |||||||||| ||||||||||||| | |||||| ||||||||||||||||    
T  26651124 atttaagctcaaaattatgttttggtatgcgtaatagggtcaactgtgtcatttattatgggacggagggagtaa 26651050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 48448706 - 48448779
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| |||||  |||| ||||||||||||||||||| |  |||||||||| ||||||||||    
T  48448706 atttaagctcaaaattatgcattagtatgtgtaattgggtcaactgtgtcatgtattaagggatggagggagta 48448779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30462097 - 30462035
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaaggga 63  Q
    ||||||||| |||||||||||||| ||| | ||||||| |||||||| | |||||||||||||    
T  30462097 atttaaacttaaaattacgcattggtatacataattggatcaactgtatcacttattaaggga 30462035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32972211 - 32972138
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| |||||   ||||||||| |  |||||||||| | ||||||||||||||||||||||    
T  32972211 atttaagctcaaaattatgcattagaatgcgtaatggaatcaactgtgtcatttattaagggacggagggagta 32972138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 29247834 - 29247888
Alignment:
Q  20 cattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||  |||||||||||| |  |||||||||||||||||||||    
T  29247834 cattgacatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 29247888  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5842306 - 5842379
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||| || ||||||  |||||||||||| |  ||||| |||||||| ||||||    
T  5842306 atttaagctcaaaattatgcattgacattcgtaatatggtcaactgtgtcatgtattatgggacggaaggagta 5842379  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25571568 - 25571495
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| || ||||||| | ||||| || |||||| ||||||||||||| || ||||| |||||| ||||||||    
T  25571568 atttaagcttaaaattatgtattgacattcgtaatagggtcaactgtgtcacgtattatgggacgaagggagta 25571495  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47713308 - 47713235
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| ||| ||||||| |||||||||  |||||| ||||| |  ||||| |||||||||||||||    
T  47713308 atttaagctcaaagttatgcattgacatgcgtaataaggtcaattgtgtcaaatattatgggacggagggagta 47713235  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 9173204 - 9173164
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgt 49  Q
    ||||||||| ||||||| ||||||||| |||||||||||||    
T  9173204 tcaaaattatgcattgacatgcgtaatagggtcaactgtgt 9173164  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41007833 - 41007765
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagg 69  Q
    |||||||||||||||||  |||||| || ||||||  |||||||||||| |  ||||| ||||||||||    
T  41007833 atttaaactcaaaattatacattgacatacgtaataaggtcaactgtgtcaagtattatgggacggagg 41007765  T

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Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41319799 - 41319726
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41319799 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagta 41319726  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42754230 - 42754154
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatt 77  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42754230 atttaaactcaaaattacacattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagggagtaatt 42754154  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10333453 - 10333378
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  10333453 atttaaactcaaaattacgcattggtatgcgtaatcgggtcaactgtgtcacttattaagggacggagggagtaat 10333378  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40471924 - 40471998
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  40471924 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcatttattaagggacggagggagtaa 40471998  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31603292 - 31603219
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  31603292 atttaaactcaaaattacgcattggtatgcctaattgggtcaactgtgtcacttattaagggacggagggagta 31603219  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41437020 - 41437093
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  41437020 atttaaactcaaaattacgcattggtatgcgtaaatgggtcaactgtgtcacttattaagggacggagggagta 41437093  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5096436 - 5096509
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  5096436 atttaaactcaaaattacgcattggtatgcgtaattgaatcaactgtgtcacttattaagggacggagggagta 5096509  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7724485 - 7724412
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  7724485 atttaaacccaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacagagggagta 7724412  T

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Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 20917802 - 20917727
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  || | ||||||||||||||||||||||||    
T  20917802 atttaaactcaaaattacgcattgatatgcgtaattggatcaactaggtcatttattaagggacggagggagtaat 20917727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4137597 - 4137670
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||| ||||    
T  4137597 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaaggaatggaggaagta 4137670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8373622 - 8373695
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||    
T  8373622 atttaaacttaaaattacacattgatatacgtaattgggtcaactgtgtcacttattaagggacggatggagta 8373695  T

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Target: chr2; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11277722 - 11277799
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaatta 78  Q
    |||||||||||||||||||||||| |||||||||||   |||||||| | ||||||||||||||||||||||||||||    
T  11277722 atttaaactcaaaattacgcattggtatgcgtaatttcatcaactgtatcacttattaagggacggagggagtaatta 11277799  T

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Target: chr2; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20682830 - 20682905
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaat 76  Q
    ||||||||||||||||| ||||||| ||||||||| | ||||||||||| | ||||||||||||||||||||||||    
T  20682830 atttaaactcaaaattatgcattgaaatgcgtaatggagtcaactgtgtcatttattaagggacggagggagtaat 20682905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1749047 - 1748974
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||  || ||||||||| ||||||||||||||    
T  1749047 atttaaactcaaaattacgcattggtatacgtaattgggtcaactaggtcacttattaaaggacggagggagta 1748974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38963983 - 38964056
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||| ||| | ||||||    
T  38963983 atttaaactcaaaattacacattggtatgcgtaattgagtcaactgtgtcacttattaaggaacgaaaggagta 38964056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37987811 - 37987748
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggac 64  Q
    |||||||||||||||||| |||| |||||||||||| | |||||||||  ||||||||||||||    
T  37987811 atttaaactcaaaattacacattaatatgcgtaattagatcaactgtgccacttattaagggac 37987748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37317064 - 37317137
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||  ||||||||| | ||||||||||| |  |||||||||||||||||||||    
T  37317064 atttaagctcaaaattatgcattggaatgcgtaatggagtcaactgtgtcatgtattaagggacggagggagta 37317137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41575750 - 41575824
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||| |||||||||| ||||||| |||||||||   ||||||||| | |  ||||||||||||||||||||||    
T  41575750 atttaagctcaaaattatgcattgaaatgcgtaatgcagtcaactgtatcatatattaagggacggagggagtaa 41575824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6729978 - 6729905
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||  ||||||||| | ||||| ||||| |  |||||||||||||||||||||    
T  6729978 atttaagctcaaaattatgcattggaatgcgtaatggagtcaagtgtgtcatgtattaagggacggagggagta 6729905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 16125950 - 16125885
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||| |||||||||||||||||| |||||||||| | |  ||||||| ||| |||||||||    
T  16125950 tcaaaattatgcattgatatgcgtaattaggtcaactgtctcatgtattaagagacagagggagta 16125885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7601272 - 7601202
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggaggga 71  Q
    |||||| |||||| ||| ||||||| |||||||||   ||||||||||| |  ||||||||||||||||||    
T  7601272 atttaagctcaaagttatgcattgacatgcgtaataaagtcaactgtgtcaagtattaagggacggaggga 7601202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 16333675 - 16333740
Alignment:
Q  9 tcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    ||||||||| |||||| ||||||||||| |||||||||| | |  ||||||| ||| |||||||||    
T  16333675 tcaaaattatgcattggtatgcgtaattaggtcaactgtctcatgtattaagagacagagggagta 16333740  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16646434 - 16646507
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| || ||||||| ||||||| ||||||||| | ||||||||| | |  |||||||||||||| ||||||    
T  16646434 atttaagcttaaaattatgcattgaaatgcgtaatggagtcaactgtatcatgtattaagggacggaaggagta 16646507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 25627211 - 25627284
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| ||||||  |||| ||||  |||||||| ||| |  |||||||||||||||||||||    
T  25627211 atttaagctcaaaattatgcattgtcatgcataataaggtcaactatgtcaagtattaagggacggagggagta 25627284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 184154 - 184227
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  184154 atttaaactcaaaattacgcattggtatgcgtaattgggtcaactgtatcacttattaaaggacggagggagta 184227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3171 - 3244
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||||||| |||||| ||||||||||  |||||||||||| |  ||||| |||||||||||||||    
T  3171 atttaagctcaaaattatgcattggtatgcgtaatatggtcaactgtgtcatgtattatgggacggagggagta 3244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 553 - 479
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagtaa 75  Q
    |||||| |||||||||| ||||||| || |||||| ||||||||||||| |  ||||| ||||||| ||||||||    
T  553 atttaagctcaaaattatgcattgacatacgtaatagggtcaactgtgtcatgtattatgggacggcgggagtaa 479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 121 - 48
Alignment:
Q  1 atttaaactcaaaattacgcattgatatgcgtaattgggtcaactgtgtaacttattaagggacggagggagta 74  Q
    |||||| |||||| |||  |||||  |||||||||  |||||||||||| |  |||||||||||||||||||||    
T  121 atttaatctcaaagttatacattggcatgcgtaataaggtcaactgtgtcaagtattaagggacggagggagta 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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