View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2086_low_54 (Length: 218)

Name: NF2086_low_54
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2086_low_54
NF2086_low_54
[»] chr3 (5 HSPs)
chr3 (7-189)||(24638149-24638331)
chr3 (7-189)||(24647078-24647260)
chr3 (86-169)||(20620714-20620798)
chr3 (65-132)||(20619706-20619773)
chr3 (124-189)||(48099378-48099444)
[»] scaffold0197 (1 HSPs)
scaffold0197 (65-132)||(7237-7304)
[»] chr8 (3 HSPs)
chr8 (65-126)||(15935270-15935331)
chr8 (124-189)||(40270352-40270418)
chr8 (125-189)||(19183628-19183693)
[»] scaffold0009 (1 HSPs)
scaffold0009 (124-189)||(32121-32187)
[»] chr5 (1 HSPs)
chr5 (124-171)||(1545864-1545912)
[»] scaffold0655 (1 HSPs)
scaffold0655 (135-189)||(5642-5696)
[»] scaffold0134 (1 HSPs)
scaffold0134 (124-189)||(41039-41105)
[»] chr6 (3 HSPs)
chr6 (124-189)||(16594888-16594954)
chr6 (92-138)||(21875304-21875350)
chr6 (135-189)||(33166253-33166307)
[»] chr1 (2 HSPs)
chr1 (124-189)||(9932096-9932162)
chr1 (124-189)||(24210235-24210301)
[»] chr2 (1 HSPs)
chr2 (124-169)||(40623336-40623381)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 24638149 - 24638331
Alignment:
Q  7 gtgaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacataactactaacata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638149 gtgaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacataactactaacata 24638248  T
Q  107 attacataaagtcaaacattctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24638249 attacataaagtcaaacattctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtctgaaaatcatca 24638331  T

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Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 24647078 - 24647260
Alignment:
Q  7 gtgaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacataactactaacata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24647078 gtgaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattaccaacatagctactaacata 24647177  T
Q  107 attacataaagtcaaacattctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24647178 attacataaagtcaaacattctatcacaccccgcagttgaagcgggaggtttacggacgcttagaatggtctgaaaatcatca 24647260  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 20620798 - 20620714
Alignment:
Q  86 accaacataactactaacataattacataaagtcaaacattctatcacacc-ccgcagttgaagcgggaggtttacggacgctta 169  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||| ||| |||||||    
T  20620798 accaacataattactaacataattacataaagtcaaacattctatcatacctccgaagtcgaagcgggaggttcacgaacgctta 20620714  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 20619773 - 20619706
Alignment:
Q  65 gagagtaattacaaaataattaccaacataactactaacataattacataaagtcaaacattctatca 132  Q
    ||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||    
T  20619773 gagagtaattaaaaaataataaccaacgtaaatactaacataattacataaagtcaaacattctatca 20619706  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 48099378 - 48099444
Alignment:
Q  124 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    ||||||||||||||| ||||| ||||||||||||| ||| || |||||| ||||  |||||||||||    
T  48099378 attctatcacacccccgcagtcgaagcgggaggttcacgaacacttagactggttcgaaaatcatca 48099444  T

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Target: scaffold0197 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 7304 - 7237
Alignment:
Q  65 gagagtaattacaaaataattaccaacataactactaacataattacataaagtcaaacattctatca 132  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  7304 gagagtaattacaaagtaataaccaacataattactaacataattacataaggtcaaacattctatca 7237  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 15935270 - 15935331
Alignment:
Q  65 gagagtaattacaaaataattaccaacataactactaacataattacataaagtcaaacatt 126  Q
    |||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||||||    
T  15935270 gagagtgattacaaaataataaccaacataattagtaacataattacataaagtcaaacatt 15935331  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 40270352 - 40270418
Alignment:
Q  124 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||| ||||  |||||||||||    
T  40270352 attctatcacacccccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatca 40270418  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 19183693 - 19183628
Alignment:
Q  125 ttctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    |||||||||||||| ||||| ||||||||||||| ||  ||||||||| ||||  |||||||||||    
T  19183693 ttctatcacacccccgcagtcgaagcgggaggttcacaaacgcttagactggtccgaaaatcatca 19183628  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 32187 - 32121
Alignment:
Q  124 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||| ||||  |||||||||||    
T  32187 attctatcacacccccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatca 32121  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 1545864 - 1545912
Alignment:
Q  124 attctatcacaccc-cgcagttgaagcgggaggtttacggacgcttaga 171  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  1545864 attctatcacaccctcgcagtcgaagcgggaggttcacggacgcttaga 1545912  T

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Target: scaffold0655 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 5642 - 5696
Alignment:
Q  135 ccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||   ||||||||||    
T  5642 ccccgcagtcgaagcgggaggttcacggacgcttagactggtccaaaaatcatca 5696  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 41105 - 41039
Alignment:
Q  124 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    ||||||||||||||| | ||| ||||||||||||| ||||||||||||| ||||  |||| ||||||    
T  41105 attctatcacacccccgtagtcgaagcgggaggttcacggacgcttagactggtccgaaagtcatca 41039  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 16594954 - 16594888
Alignment:
Q  124 attctatcacaccc-cgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    |||||||||||||| |||||| ||||||||||||| |||||| |||||| | ||  |||||||||||    
T  16594954 attctatcacaccctcgcagtcgaagcgggaggttcacggacacttagactagtccgaaaatcatca 16594888  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 21875304 - 21875350
Alignment:
Q  92 ataactactaacataattacataaagtcaaacattctatcacacccc 138  Q
    |||| ||| |||||||||||| ||||||||||||| |||||||||||    
T  21875304 ataattacgaacataattacagaaagtcaaacattttatcacacccc 21875350  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 33166307 - 33166253
Alignment:
Q  135 ccccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    ||||||||| ||||||||||||| ||||||||| ||| ||||  |||||||||||    
T  33166307 ccccgcagtcgaagcgggaggttcacggacgctgagactggtccgaaaatcatca 33166253  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 9932096 - 9932162
Alignment:
Q  124 attctatcacacccc-gcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    ||||||||||||||| ||||| ||||||||||||| ||| || |||||| ||||  |||||||||||    
T  9932096 attctatcacacccccgcagtcgaagcgggaggttcacgaacacttagactggttcgaaaatcatca 9932162  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 24210301 - 24210235
Alignment:
Q  124 attctatcacac-cccgcagttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatca 189  Q
    ||||||||| || |||||||| ||||||||||||| ||||||||| ||| ||||  |||||||||||    
T  24210301 attctatcagactcccgcagtcgaagcgggaggttcacggacgctaagactggtccgaaaatcatca 24210235  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 40623381 - 40623336
Alignment:
Q  124 attctatcacaccccgcagttgaagcgggaggtttacggacgctta 169  Q
    |||||||||||||||| ||| |||| |||||||| |||||||||||    
T  40623381 attctatcacaccccggagtcgaagggggaggttcacggacgctta 40623336  T

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