View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_7 (Length: 493)
Name: NF2086_low_7
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 37319561 - 37319845
Alignment:
| Q |
1 |
caattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatgaaattctaaaa |
100 |
Q |
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| T |
37319561 |
caattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatgaaattctaaaa |
37319660 |
T |
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| Q |
101 |
atagctatcctgattgatcaataatatgaatacagttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaaagaaataaag |
200 |
Q |
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| T |
37319661 |
atagcaatgctgattgatcaataatatgaatacggttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaaagaaataaag |
37319760 |
T |
|
| Q |
201 |
taaaagaaatcctgaagtaaaactcagaataatttttctaaaacacaccttgttgctcacttggactagtgtgttctagacagtg |
285 |
Q |
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| T |
37319761 |
taaaagaaatcctgaagtaaaactcagaataaattttctaaaacaaacctagttgctcacttggactagtgtgttctagacagtg |
37319845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 37319983 - 37320110
Alignment:
| Q |
285 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
384 |
Q |
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| T |
37319983 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
37320082 |
T |
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| Q |
385 |
agtctatgacattaacaaacaaaaacat |
412 |
Q |
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| T |
37320083 |
agtctatgacattaacaaacaaaaacat |
37320110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 37320171 - 37320224
Alignment:
| Q |
405 |
aaaaacatgacaagtacagactagtaaatcataacaacacaacaatcttaatta |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320171 |
aaaaacatgacaagtacagactagtaaatcataacaacacaacaatcttaatta |
37320224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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