View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2086_low_8 (Length: 487)
Name: NF2086_low_8
Description: NF2086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2086_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 28603613 - 28604060
Alignment:
| Q |
18 |
ttaaggtatgttaaccttcaaaacaacagtttctatggtgaaatacctcaagaaataggtcatttgtttaggctaaaggagctttatctgaccaataaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28603613 |
ttaaggtatgttaaccttcaaaacaacagtttctatggtgaaataccacaagaaataggtcatttgtttaggctaaaggagctttatctgaccaataaca |
28603712 |
T |
|
| Q |
118 |
cattcaagggtcaaattcccactaacttgtctagttgctctaagctcaagagcttgagtttaacaggaaacaaactagttggaaagataccaaaggagct |
217 |
Q |
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||||||||||||||||||| || |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28603713 |
cattcaagggtcaaattccaaccaacttgtctagttgctttagacttaagagcttgagtttaacaggaaacaaactagttggaaagataccaaaggagct |
28603812 |
T |
|
| Q |
218 |
tggttatcttactaagctagaagttctatctattggtatgaactatttgagtggtgaaatccctgcatctataggaaatctttcatctcttagtgttctc |
317 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28603813 |
tggttatcttacgaagctagaatttctatctattggtatgaacaatttgagtggtgaaatccctgcatctataggaaatctttcatctcttagtgttctc |
28603912 |
T |
|
| Q |
318 |
atttttggaatcaataatttggaaggaaatttacctgaagagataggccatctgaacaatttaacacatatctctattgcatcaaacaaactatatggta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28603913 |
atttttggaatcaataatttggaaggaaatttacctgaagagataggccatctgaaaaatttaacacatatctctattgcatcaaacaaactatatggta |
28604012 |
T |
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| Q |
418 |
tgcttccttttacattatttaatatgtcatctctcactttcttctcag |
465 |
Q |
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| T |
28604013 |
tgcttccttttacattatttaatatgtcatctctcactttcttctcag |
28604060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 21 - 465
Target Start/End: Complemental strand, 27726272 - 27725828
Alignment:
| Q |
21 |
aggtatgttaaccttcaaaacaacagtttctatggtgaaatacctcaagaaataggtcatttgtttaggctaaaggagctttatctgaccaataacacat |
120 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||| || | |||| ||||||| ||||| ||||| | || || ||||| |||||||||||| |
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| T |
27726272 |
aggtatgtcaaccttcaaaacaacagcttctatggtgaaatcccacgagaattaggtcagttgttctggctagaagacctgtatcttaccaataacacac |
27726173 |
T |
|
| Q |
121 |
tcaagggtcaaattcccactaacttgtctagttgctctaagctcaagagcttgagtttaacaggaaacaaactagttggaaagataccaaaggagcttgg |
220 |
Q |
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| | |||||||||||| | ||||||| ||| ||| | || |||| |||||| |||||||||||||||| |||||||| ||||| |||||||| |
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| T |
27726172 |
ttagaggtcaaattcccgccgttttgtctaattgttctgaactgaagatcttgagcctaacaggaaacaaacttgttggaaaaatacctttagagcttgg |
27726073 |
T |
|
| Q |
221 |
ttatcttactaagctagaagttctatctattggtatgaactatttgagtggtgaaatccctgcatctataggaaatctttcatctcttagtgttctcatt |
320 |
Q |
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| ||| ||||| |||||||| |||||||||||||||||| |||||| || ||||||||| ||| |||||||||||||||||| |||||| |||||||| |
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| T |
27726072 |
ctttctaactaaactagaagtgctatctattggtatgaacaatttgacaggagaaatcccttcatttataggaaatctttcatcacttagtattctcatt |
27725973 |
T |
|
| Q |
321 |
tttggaatcaataatttggaaggaaatttacctgaagagataggccatctgaacaatttaacacatatctctattgcatcaaacaaactatatggtatgc |
420 |
Q |
| |
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|| ||| |||| || || || ||||| | ||||||||||||||| |||| || | ||| || | |||||||||| || | |||||||||| |||||||| |
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| T |
27725972 |
ttgggattcaacaacttagagggaaaggtgcctgaagagataggcaatcttaaaagtttgactcgtatctctattacaaccaacaaactatctggtatgc |
27725873 |
T |
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| Q |
421 |
ttccttttacattatttaatatgtcatctctcactttcttctcag |
465 |
Q |
| |
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|||||| || | | | ||| ||||||| ||||||||| ||||||| |
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| T |
27725872 |
ttccttctaaactctataacatgtcatatctcactttattctcag |
27725828 |
T |
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