View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20870_high_2 (Length: 389)
Name: NF20870_high_2
Description: NF20870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20870_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 2624426 - 2624066
Alignment:
| Q |
12 |
atgaagatgagagaaaatgtgacggacaacttcgccatctgactaattctttacaatggaagaaacttcatgaattgcatatggattttgggactaagtc |
111 |
Q |
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| T |
2624426 |
atgaagatgagagaaaatgtgacggtcaacttcgtcatctgactaattctttacaatggaaaaaacttcatgaattgtatatggattttgggactaagtc |
2624327 |
T |
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| Q |
112 |
aagaaaccatatgcttgaatttgctacatattgaataaatcgatatatgcaaatttaatagtaacatagttcatggcccattctcccaatatatgcaaat |
211 |
Q |
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| T |
2624326 |
aagaaaccatatgcttgaatttgctacatattgaataaatcgatatatgcaaatttaatagtaacatagttcatggcccattctcccaatatatgcaaat |
2624227 |
T |
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| Q |
212 |
atattatgttatctatgatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattgagaccatgagaatgaaatttct |
311 |
Q |
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| T |
2624226 |
acattatgttatctatgatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattgagaccatgagaatgaaatttct |
2624127 |
T |
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| Q |
312 |
ccaaaagactaaactagagaacaagtttatgaatgctcgtacaataacaagactattttct |
372 |
Q |
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| T |
2624126 |
ccaaaagactaaactagagaacaagtttatgaatgctcgtacaataacaagactattttct |
2624066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 6186185 - 6186267
Alignment:
| Q |
208 |
aaatatattatgttatctatgatgattttgggtctaagacaaccaagatacgacatatatgtttatctaagtccattgattga |
290 |
Q |
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| T |
6186185 |
aaatatattatgttatcgatgatgatttcgggcccatatcaaccaggtaacgacatagatgtttatctaagtccattgattga |
6186267 |
T |
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