View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20870_low_1 (Length: 436)
Name: NF20870_low_1
Description: NF20870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20870_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 1482149 - 1481732
Alignment:
| Q |
1 |
taaacacaatattaacaacactaaattaattcaaattcaaactaatcagatagaactaaaatataaacactcatcatcacataacaaatcaacaaaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1482149 |
taaacacaatattaacaacactaaattaattcaaattcaaactaatcagatagaactaaa-tataaacactcatcatcacataacaaatcaacaaaacaa |
1482051 |
T |
|
| Q |
101 |
cagaatattaacaacaataacttaattcatcatgtaactaacttgtaaaacaaatttagacaatgtttgtcttattgtgatagaatttagatttgtgaat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1482050 |
cagaatattaacaacaataacttaattcataatgtaactaacttgtaaaacaaatttagacaatgtttgtcttattgtgatagaatttagatttgtgaat |
1481951 |
T |
|
| Q |
201 |
aagattagttagtttagttagatcacaatgtaactaacttgtaactatcttaaacaatattcaactaattttaacagattatctttagtcatcatgttga |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481950 |
acgattagttagtttagttagatcacaatgtaactaacttgtaactatcttaaacaatattcaactaattttaacagattatctttagtcatcatgttga |
1481851 |
T |
|
| Q |
301 |
gtcactacaaacgacgtagaaaccttgtatactgagcaatttacctgtgaaaacgccttgtatgctatcgagtataacagatatagaaaccagaagagcc |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481850 |
gtcactacaaactacgtagaaaccttgtatactgagcaatttacctgtgaaaacgccttgtatgctatcgagtataacagatatagaaaccagaagagcc |
1481751 |
T |
|
| Q |
401 |
aagacagtaacgtatttaa |
419 |
Q |
| |
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||||||||||||||||||| |
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| T |
1481750 |
aagacagtaacgtatttaa |
1481732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36716937 - 36716878
Alignment:
| Q |
1 |
taaacacaatattaacaacactaaattaattcaaattcaaactaatcagatagaactaaa |
60 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||| |||| |||| |||||||| |
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|
| T |
36716937 |
taaacacaatattaacaacactaatttagttcatattcaaattaataagatggaactaaa |
36716878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 34728685 - 34728641
Alignment:
| Q |
231 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
276 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||| |
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|
| T |
34728685 |
taactaacatgtaacta-cttaaacaatattcaactaattctaaca |
34728641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 34893594 - 34893626
Alignment:
| Q |
232 |
aactaacttgtaactatcttaaacaatattcaa |
264 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
34893594 |
aactagcttgtaactatcttaaacaatattcaa |
34893626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 243 - 419
Target Start/End: Complemental strand, 49191238 - 49191062
Alignment:
| Q |
243 |
aactatcttaaacaatattcaactaattttaacagattatctttagtcatcatgttgagtcactacaaacgacgtagaaaccttgtatactgagcaattt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||| |||||||||||||||||||||| || ||||||||||| |||| ||||||||| |
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|
| T |
49191238 |
aactatcttaaacaatattcaactaattctagcatattatctttagtgatcatgttgagtcactacaaacaacatagaaaccttgcatacggagcaattt |
49191139 |
T |
|
| Q |
343 |
acctgtgaaaacgccttgtatgctatcgagtataacagatatagaaaccagaagagccaagacagtaacgtatttaa |
419 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
49191138 |
acctgcgagaacgccttgtatgctgtcgagtataacggatatagaaaccagaggagccaagacagtgacgtatttaa |
49191062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 49191288 - 49191237
Alignment:
| Q |
148 |
aaacaaatttagacaatgtttgtcttattgtgatagaatttagatttgtgaa |
199 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49191288 |
aaacaaacttagagaatgtttgtcttattgtgatagaatttagatttgtgaa |
49191237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 2622073 - 2622028
Alignment:
| Q |
231 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
276 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| ||||| |
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|
| T |
2622073 |
taactaactcgtaactaccttaaacaatattcaactaattctaaca |
2622028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 4573136 - 4573181
Alignment:
| Q |
231 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
276 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||| |||| |
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|
| T |
4573136 |
taactaacttataactatcttaaacaatactaaactaatttcaaca |
4573181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 37214282 - 37214237
Alignment:
| Q |
231 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
276 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||||||| ||||| |
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|
| T |
37214282 |
taactaacttttaactaccttaaacaatatccaactaattctaaca |
37214237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 41356668 - 41356623
Alignment:
| Q |
231 |
taactaacttgtaactatcttaaacaatattcaactaattttaaca |
276 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||| ||||| |
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|
| T |
41356668 |
taactaacttgtaacgaacttaaacaatattcaacgaattctaaca |
41356623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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