View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20870_low_3 (Length: 343)
Name: NF20870_low_3
Description: NF20870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20870_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 14175628 - 14175942
Alignment:
| Q |
1 |
caaaggatgtgatgcactctattggtcacactgacagcatctagtttatcattttgttgaactaaatttagaatttttctcacctgtattgattcccaat |
100 |
Q |
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| T |
14175628 |
caaaggatgtgatgcactctattggtcacattgacagcatctagtttatcattttgttgaactaaatttataattttcctcacctgtattgattcccaat |
14175727 |
T |
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| Q |
101 |
tttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataacttcaccttttctccaccttcaacttgaagg |
200 |
Q |
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| T |
14175728 |
tttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataacttcaccttttcttcaccttcaacttgaagg |
14175827 |
T |
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| Q |
201 |
taataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctcttttttctggtggcaactcaaaaagactagaaattgctttcatca |
300 |
Q |
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| T |
14175828 |
taataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctctttcttctggtggcaactcaaaaagacttgaaattgctttcatca |
14175927 |
T |
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| Q |
301 |
ttttagtgcaaactt |
315 |
Q |
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| T |
14175928 |
ttttagtgcaaactt |
14175942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 73 - 325
Target Start/End: Original strand, 14172249 - 14172501
Alignment:
| Q |
73 |
atttttctcacctgtattgattcccaattttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataactt |
172 |
Q |
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| T |
14172249 |
attttgctcacctgtattgagtcccaattttttctggtaaaagctgaatgatatcatcaataggataccatggatgagcaaaacattcactccacaactt |
14172348 |
T |
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| Q |
173 |
caccttttctccaccttcaacttgaaggtaataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctcttttttctggtggcaac |
272 |
Q |
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| T |
14172349 |
aaccttttctccaccatccacttgaaggtaataattgaacaaccttacattcttggtattatctgttgatgaaagatgttctctttcctctggtgccaac |
14172448 |
T |
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| Q |
273 |
tcaaaaagactagaaattgctttcatcattttagtgcaaacttggtctggaac |
325 |
Q |
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| T |
14172449 |
tcaaagaagttggtaattgctttcatcattttagtgcaaacttggtcaggaac |
14172501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 73 - 325
Target Start/End: Original strand, 14179709 - 14179961
Alignment:
| Q |
73 |
atttttctcacctgtattgattcccaattttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataactt |
172 |
Q |
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| T |
14179709 |
atttttctcacctgtattgggtcccaatattttctggtagaagagaaatgatatcatccataggataccatggatgaacaaaattttcactccacaactt |
14179808 |
T |
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| Q |
173 |
caccttttctccaccttcaacttgaaggtaataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctcttttttctggtggcaac |
272 |
Q |
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|||| |||||||||| || ||| |||| ||||||||| ||| ||||||||||||||| |||||||||| || ||||||| ||||| ||||||| |||| |
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| T |
14179809 |
caccgtttctccaccatctactcgaagtaaataattgaccaatcttacattcttggtatgatctgttgatgaaagatgttttctttcctctggtgccaac |
14179908 |
T |
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| Q |
273 |
tcaaaaagactagaaattgctttcatcattttagtgcaaacttggtctggaac |
325 |
Q |
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| T |
14179909 |
tcaaagaagtttgtaattgctttcatcattttagtgcaaacttggtcaggaac |
14179961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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