View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20870_low_4 (Length: 326)
Name: NF20870_low_4
Description: NF20870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20870_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 3120740 - 3120946
Alignment:
| Q |
44 |
aatatagaccaatcgacgagcctgacttattgcatcaaagatatcatgccaacaatttccactctcataaataacatcatgatcacacccatcaaccctc |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3120740 |
aatatagaccaatcgacgagcctgacttattgcatcaaagatatcttgccaacaatttccactctcataaataacatcatgatcaccaccatcaaccctc |
3120839 |
T |
|
| Q |
144 |
aaaccaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3120840 |
aaaccaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataat |
3120939 |
T |
|
| Q |
244 |
cagaacc |
250 |
Q |
| |
|
||||||| |
|
|
| T |
3120940 |
cagaacc |
3120946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 3114884 - 3115085
Alignment:
| Q |
44 |
aatatagaccaatcgacgagcctgacttattgcatcaaagatatcatgccaacaatttccactctcataaataacatcatgatcacacccatcaaccctc |
143 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| |
|
|
| T |
3114884 |
aatatataccaatcgtcgcgcctgacttattgcatcaaagatatcatgccaacaatttccactctcataactcaaatcatgatcaccaccatcaaccctc |
3114983 |
T |
|
| Q |
144 |
aaaccaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataat |
243 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
3114984 |
aaactaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaat |
3115083 |
T |
|
| Q |
244 |
ca |
245 |
Q |
| |
|
|| |
|
|
| T |
3115084 |
ca |
3115085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 36842200 - 36842267
Alignment:
| Q |
168 |
acatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgcc |
235 |
Q |
| |
|
||||| |||||||||||||| || || || || ||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
36842200 |
acatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcc |
36842267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 28531467 - 28531399
Alignment:
| Q |
164 |
tggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaac |
232 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||| ||||| || | |||||||| || |||||||| |
|
|
| T |
28531467 |
tggaacatgagcatcttgatatagagtaacatttccccctttcctcaaaggaaaataagtggcaggaac |
28531399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University