View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20870_low_5 (Length: 302)
Name: NF20870_low_5
Description: NF20870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20870_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 14170354 - 14170064
Alignment:
| Q |
1 |
tcaatacctccctctcatactagagggttgaagacaaacaaaaacctattctttttagcaattattgtctaactttgaacaattaagtaattaaattgaa |
100 |
Q |
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| T |
14170354 |
tcaatacctccttctcatactagagggttgaagacaaacaaaaacctattttttttagcaattattgtctaactttgaacaattaagtaattaaattgaa |
14170255 |
T |
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| Q |
101 |
ttcattttatcgattgcgatactagggaatatttaatattattgagtactagaaagtttcaaaatctataatac----nnnnnnnnnnnntcaaacaaaa |
196 |
Q |
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| T |
14170254 |
ttcattttattgattgcgatactagggaatatttaatattattgagtactagaaagtttcaaaatctataatacaaaaaaaaataaaaaatcaaacaaaa |
14170155 |
T |
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| Q |
197 |
tggcttttgatcaatctcaagatcaagtatgtcnnnnnnntaaaataaggataagaacttttttctgtttataagatcaagaagttgaaga |
287 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14170154 |
tggcttttgatcaatctcaagatcaagtctgtcaaaaaaataaaataaggataagaacttttttctgtttataagatcaagaagttgaaga |
14170064 |
T |
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