View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20870_low_6 (Length: 288)
Name: NF20870_low_6
Description: NF20870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20870_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 14856254 - 14856508
Alignment:
| Q |
16 |
aaaaaaccaagaaatatgacaacaacactcttcaaattcatttgcttcttttgtgtatgttcccatttattaaaagatgcatatatgatgtagaggagac |
115 |
Q |
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| T |
14856254 |
aaaaaaccaagaaatatgacaacaacactcttcaaattcatttgcttcttttgtgtatgttcccatttattaaaagatgcatatatgatgtagaggagac |
14856353 |
T |
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| Q |
116 |
catatctgaggcataaaagaatataaattatgcagaggagataaatctaaatagatcttgcttggttgaaaacatttgttgttgtattagatcactaatg |
215 |
Q |
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| T |
14856354 |
cagatctgaggcataaaagaatataaattatgcagaggagataaatctaaatagatcttgcttggttgaaaacatttgttgttgtattagatcactaatg |
14856453 |
T |
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| Q |
216 |
aagatgagaggttgagatagacaagatgaagaagatgaaaagtagcatcgattga |
270 |
Q |
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| T |
14856454 |
aagatgagaggttgagatagacaagatgaagaagatgaaaagtagcatcgattga |
14856508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 38783947 - 38783790
Alignment:
| Q |
53 |
tcatttgcttcttttgtgtatgttcccatttattaaaagatgcatatatgatgtagaggagaccatatctgaggcataaaagaatataaattatgcagag |
152 |
Q |
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| T |
38783947 |
tcatttgcttcttttgtgtatgatccaatttattaaaagatgcatat-----gtagaggagaccagatctgaggcatagaagaatagaaattatgcagag |
38783853 |
T |
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| Q |
153 |
gagataaatctaaatagatcttgcttggttgaaaacatttgttgttgtattagatcactaatg |
215 |
Q |
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| T |
38783852 |
gagatcaatctaaatagatcttgcttggttgaaagcatttgttgttgtgttagatcactaatg |
38783790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 38782868 - 38782803
Alignment:
| Q |
210 |
ctaatgaagatgagaggttgagatag-----acaagatgaagaagatgaaaagtagcatcgattga |
270 |
Q |
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| T |
38782868 |
ctaatgaagatgagaggttgagataggatagaaaagatgaagaggatgaaaagtagcatcgattga |
38782803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 43577831 - 43577924
Alignment:
| Q |
16 |
aaaaaaccaagaaatatgacaacaacactcttcaaattcatttgcttcttttgtgtatgttcccatttattaaaagatgcatatatgatgtagagg |
111 |
Q |
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| T |
43577831 |
aaaaaaccaagaaatatgacaacaacactcttcaaattcatttgcttcttttgtgtatgt--ccatttattaaaagatgcatatatgatgtagagg |
43577924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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