View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20871_low_2 (Length: 259)

Name: NF20871_low_2
Description: NF20871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20871_low_2
NF20871_low_2
[»] chr1 (17 HSPs)
chr1 (215-259)||(2403057-2403101)
chr1 (215-259)||(1673375-1673419)
chr1 (215-259)||(29637342-29637386)
chr1 (215-259)||(1994959-1995003)
chr1 (215-259)||(27325760-27325804)
chr1 (215-259)||(44797598-44797642)
chr1 (215-259)||(46845788-46845832)
chr1 (215-259)||(527031-527075)
chr1 (215-259)||(40030844-40030888)
chr1 (215-257)||(33502658-33502700)
chr1 (215-255)||(6487734-6487774)
chr1 (215-259)||(7178243-7178287)
chr1 (215-259)||(15225123-15225167)
chr1 (215-259)||(26040976-26041020)
chr1 (215-259)||(32267597-32267641)
chr1 (215-259)||(39858353-39858397)
chr1 (215-255)||(49430600-49430640)
[»] chr4 (18 HSPs)
chr4 (215-259)||(5817512-5817556)
chr4 (215-259)||(45996026-45996070)
chr4 (215-259)||(17044009-17044053)
chr4 (215-259)||(25164603-25164647)
chr4 (215-259)||(32290220-32290264)
chr4 (215-259)||(37605823-37605867)
chr4 (215-259)||(43749098-43749142)
chr4 (215-259)||(51579326-51579370)
chr4 (215-259)||(55281214-55281258)
chr4 (215-258)||(20107116-20107159)
chr4 (215-258)||(39631271-39631314)
chr4 (215-259)||(3287090-3287134)
chr4 (215-259)||(24059265-24059309)
chr4 (215-255)||(25784044-25784084)
chr4 (215-255)||(32525158-32525198)
chr4 (215-259)||(36851233-36851277)
chr4 (215-259)||(42179269-42179313)
chr4 (223-259)||(51579594-51579630)
[»] chr3 (13 HSPs)
chr3 (215-259)||(9271116-9271160)
chr3 (215-255)||(8330728-8330768)
chr3 (215-259)||(23004762-23004806)
chr3 (215-259)||(38247804-38247848)
chr3 (215-259)||(50989209-50989253)
chr3 (215-259)||(51092341-51092385)
chr3 (213-259)||(8496710-8496756)
chr3 (215-259)||(33288138-33288182)
chr3 (215-257)||(46135533-46135575)
chr3 (215-259)||(12224135-12224179)
chr3 (215-259)||(29915091-29915135)
chr3 (215-259)||(29964244-29964288)
chr3 (215-259)||(48034941-48034985)
[»] chr7 (10 HSPs)
chr7 (215-259)||(46576374-46576418)
chr7 (215-259)||(31741049-31741093)
chr7 (215-259)||(38349591-38349635)
chr7 (215-259)||(38755027-38755071)
chr7 (215-259)||(47480144-47480188)
chr7 (216-259)||(33496506-33496549)
chr7 (216-257)||(11752604-11752645)
chr7 (215-259)||(28713683-28713727)
chr7 (215-259)||(42974510-42974554)
chr7 (215-255)||(48460665-48460705)
[»] chr6 (8 HSPs)
chr6 (215-259)||(14314118-14314162)
chr6 (215-259)||(34792783-34792827)
chr6 (215-259)||(9045839-9045883)
chr6 (215-259)||(23915978-23916022)
chr6 (217-259)||(9521949-9521991)
chr6 (215-255)||(1244692-1244732)
chr6 (215-259)||(16717996-16718040)
chr6 (215-259)||(29429590-29429634)
[»] chr5 (5 HSPs)
chr5 (215-259)||(13988253-13988297)
chr5 (215-259)||(36890383-36890427)
chr5 (215-256)||(15285335-15285376)
chr5 (215-255)||(8378350-8378390)
chr5 (215-259)||(43100340-43100384)
[»] chr2 (10 HSPs)
chr2 (215-259)||(13697097-13697141)
chr2 (215-259)||(14945868-14945912)
chr2 (215-256)||(3121616-3121657)
chr2 (215-259)||(14242647-14242691)
chr2 (215-255)||(32599384-32599424)
chr2 (215-259)||(36272793-36272837)
chr2 (215-259)||(36709323-36709367)
chr2 (215-255)||(40095269-40095309)
chr2 (215-253)||(23860302-23860340)
chr2 (215-259)||(17823585-17823629)
[»] chr8 (15 HSPs)
chr8 (217-259)||(8368503-8368545)
chr8 (215-259)||(1993772-1993816)
chr8 (215-259)||(2599537-2599581)
chr8 (215-259)||(14342321-14342365)
chr8 (215-259)||(16465744-16465788)
chr8 (215-259)||(41075729-41075773)
chr8 (215-255)||(43066040-43066080)
chr8 (215-256)||(31774730-31774771)
chr8 (217-250)||(44077642-44077675)
chr8 (215-259)||(4077093-4077137)
chr8 (215-259)||(10391437-10391481)
chr8 (215-259)||(11904859-11904903)
chr8 (215-259)||(28898001-28898045)
chr8 (215-255)||(31523648-31523688)
chr8 (215-255)||(45413674-45413714)
[»] scaffold0933 (1 HSPs)
scaffold0933 (215-259)||(3185-3230)


Alignment Details
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 2403101 - 2403057
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2403101 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 2403057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 1673375 - 1673419
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  1673375 tgatacatagaccatcttaggtggcatgtaccacttgtacaccca 1673419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 29637386 - 29637342
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  29637386 tgatacatagaccatcttaggtggcatgtaccacttgtacaccca 29637342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 1994959 - 1995003
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  1994959 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 1995003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 27325804 - 27325760
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  27325804 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 27325760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 44797642 - 44797598
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  44797642 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 44797598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 46845832 - 46845788
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||    
T  46845832 tgatacatagaccaccttagatggcatgtaccacttatacaccca 46845788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 527075 - 527031
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||    
T  527075 tgatacatagaccaccttaggtggcatgtaccacttatacaccca 527031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 40030844 - 40030888
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||    
T  40030844 tgatacatagaccaccttaggtagcatgtaccacttgtacaccca 40030888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 33502700 - 33502658
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacacc 257  Q
    ||||||||||||||  ||||||| |||||||||||||||||||    
T  33502700 tgatacatagaccacattagatgacatgtaccacttgtacacc 33502658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 6487734 - 6487774
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  6487734 tgatacatagaccaatttaggtggcatgtaccacttgtaca 6487774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 7178287 - 7178243
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| || ||||||||| |||||||||||    
T  7178287 tgatacatagaccaccttaggtgacatgtaccatttgtacaccca 7178243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 15225167 - 15225123
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| |||||||||| |||| ||||||||    
T  15225167 tgatacatagaccaccttaggtggcatgtacaacttatacaccca 15225123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 26040976 - 26041020
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||| | |||| ||||| ||||||||||||||||||||||||    
T  26040976 tgatacacaaaccaccttaggtggcatgtaccacttgtacaccca 26041020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 32267641 - 32267597
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||  |||||||||| | |||||||||||    
T  32267641 tgatacatagaccatcttaagtggcatgtacaatttgtacaccca 32267597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 39858353 - 39858397
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| |||||| |||||||| ||||||||    
T  39858353 tgatacatagaccaccttaggtggcatataccacttatacaccca 39858397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 49430640 - 49430600
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| ||||| ||||||||||||||| ||||    
T  49430640 tgatacatagaccaccttaggtggcatgtaccacttataca 49430600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 5817556 - 5817512
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  5817556 tgatacatagaccatcttaggtggcatgtaccacttgtacaccca 5817512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 45996070 - 45996026
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  45996070 tgatacatagaccatcttaggtggcatgtaccacttgtacaccca 45996026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 17044009 - 17044053
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  17044009 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 17044053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 25164647 - 25164603
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  25164647 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 25164603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 32290220 - 32290264
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  32290220 tgatacatagaccatcttaggtggcatgtaccacttatacaccca 32290264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 37605867 - 37605823
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  37605867 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 37605823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 43749098 - 43749142
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  43749098 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 43749142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 51579326 - 51579370
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  51579326 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 51579370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 55281214 - 55281258
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  55281214 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 55281258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 20107116 - 20107159
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccc 258  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  20107116 tgatacatagaccaccttaggtggcatgtaccacttgtacaccc 20107159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 39631314 - 39631271
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccc 258  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  39631314 tgatacatagaccaccttaggtggcatgtaccacttgtacaccc 39631271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 3287090 - 3287134
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||    
T  3287090 tgatacataaaccaccttagatggtatgtaccacttgtacaccca 3287134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 24059309 - 24059265
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||||||||||||| || |||||||||||    
T  24059309 tgatacatagaccaccttagatggcatgtatcatttgtacaccca 24059265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 25784084 - 25784044
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  25784084 tgatacatagatcatcttaggtggcatgtaccacttgtaca 25784044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 32525198 - 32525158
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  32525198 tgatacatagaccatcttaggtggcatataccacttataca 32525158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 36851233 - 36851277
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||| ||||||||| ||||  ||||||||||||||||||||||||    
T  36851233 tgatgcatagaccaccttaagtggcatgtaccacttgtacaccca 36851277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 42179313 - 42179269
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||||    
T  42179313 tgatacatagaccaccttaggtggtatgtaccacttatacaccca 42179269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 51579594 - 51579630
Alignment:
Q  223 agaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  51579594 agaccaccttaggtggcatgtaccacttgtacaccca 51579630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 9271116 - 9271160
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  9271116 tgatacatagaccaccttagatggcatgtaccacttgtacaccca 9271160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 8330768 - 8330728
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  8330768 tgatacatagaccaccttagatggcatgtaccacttgtaca 8330728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 23004762 - 23004806
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  23004762 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 23004806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 38247804 - 38247848
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  38247804 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 38247848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 50989209 - 50989253
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  50989209 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 50989253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 51092341 - 51092385
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  51092341 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 51092385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 8496710 - 8496756
Alignment:
Q  213 attgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  8496710 attgatacatagaccaccttaggtggcatgtaccacttgtccaccca 8496756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 33288138 - 33288182
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||    
T  33288138 tgatacatagaccaccttaggtggtatgtaccacttgtacaccca 33288182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 46135533 - 46135575
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacacc 257  Q
    ||||||||||||||||||| |||||||||| || |||||||||    
T  46135533 tgatacatagaccatcttaaatggcatgtatcatttgtacacc 46135575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 12224179 - 12224135
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||| ||||| |||||||||||| |||||||||||    
T  12224179 tgatacataaaccaccttaggtggcatgtaccatttgtacaccca 12224135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 29915135 - 29915091
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||  |||||| |||||||||||||||||    
T  29915135 tgatacatagaccaccttatgtggcatataccacttgtacaccca 29915091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 29964288 - 29964244
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||  |||||| |||||||||||||||||    
T  29964288 tgatacatagaccaccttatgtggcatataccacttgtacaccca 29964244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 48034985 - 48034941
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||| ||||| || |||||||||||||||||||||    
T  48034985 tgatacataaaccaccttaggtgacatgtaccacttgtacaccca 48034941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 46576418 - 46576374
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  46576418 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 46576374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 31741049 - 31741093
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||    
T  31741049 tgatacatagaccaccttaggtggcatgtaccacttatacaccca 31741093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 38349635 - 38349591
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||||||||| |||||| |||||||||||||||||    
T  38349635 tgatacataaaccatcttaggtggcatataccacttgtacaccca 38349591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 38755071 - 38755027
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||    
T  38755071 tgatacatagaccaccttaggtggcatgtaccacttgaacaccca 38755027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 47480188 - 47480144
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||    
T  47480188 tgatacatagaccaccttaggtggcatgtaccatttgtacaccca 47480144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 33496506 - 33496549
Alignment:
Q  216 gatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||||||| ||||| || |||||||||||||||||||||    
T  33496506 gatacatagaccaccttaggtgacatgtaccacttgtacaccca 33496549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 11752604 - 11752645
Alignment:
Q  216 gatacatagaccatcttagatggcatgtaccacttgtacacc 257  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||    
T  11752604 gatacatagaccaccttaggtggcatgtatcacttgtacacc 11752645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 28713683 - 28713727
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||| ||||| |||||| |||||||||||||||||    
T  28713683 tgatacataaaccaccttaggtggcatataccacttgtacaccca 28713727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 42974554 - 42974510
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||| ||||| ||||||||||||||| ||||||||    
T  42974554 tgatacataaaccaccttaggtggcatgtaccacttatacaccca 42974510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 48460665 - 48460705
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| ||||| |||||||||||| |||||||    
T  48460665 tgatacatagaccaccttaggtggcatgtaccatttgtaca 48460705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 14314162 - 14314118
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  14314162 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 14314118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 34792827 - 34792783
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  34792827 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 34792783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 9045839 - 9045883
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||    
T  9045839 tgatacatagaccaccttaggtggcatgtatcacttgtacaccca 9045883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 23915978 - 23916022
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||    
T  23915978 tgatacatagatcaccttagatggcatgtaccacttatacaccca 23916022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 9521991 - 9521949
Alignment:
Q  217 atacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| || ||||| ||||||||||||||||||||||||    
T  9521991 atacatagatcaccttaggtggcatgtaccacttgtacaccca 9521949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 1244732 - 1244692
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| ||||  ||||||||||||||||||||    
T  1244732 tgatacatagaccaccttaagtggcatgtaccacttgtaca 1244692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 16717996 - 16718040
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||| ||||| |||||| |||||||||||||||||    
T  16717996 tgatacataaaccaccttaggtggcatataccacttgtacaccca 16718040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 29429590 - 29429634
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||| |||| | ||||| ||||||||||||||||||||||||    
T  29429590 tgatacacagactaccttaggtggcatgtaccacttgtacaccca 29429634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 13988253 - 13988297
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  13988253 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 13988297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 36890383 - 36890427
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  36890383 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 36890427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 15285335 - 15285376
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacac 256  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  15285335 tgatacatagaccaccttagatggcatgtaccacttatacac 15285376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 8378350 - 8378390
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| |||||||| ||||||||| |||||||    
T  8378350 tgatacatagaccaccttagatgacatgtaccatttgtaca 8378390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 43100384 - 43100340
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||||||||| ||| || |||||||||||||||||    
T  43100384 tgatacataaaccatcttaggtggtatataccacttgtacaccca 43100340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 13697141 - 13697097
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  13697141 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 13697097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 14945912 - 14945868
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  14945912 tgatacatagaccaccttaggtggcatgtaccacttgtacaccca 14945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 3121616 - 3121657
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacac 256  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  3121616 tgatacatagaccaccttagatggcatgtaccacttatacac 3121657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 14242691 - 14242647
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||    
T  14242691 tgatacatagaccatcttaggtggtatgtaccacctgtacaccca 14242647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 32599424 - 32599384
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  32599424 tgatacatagaccaccttaggtggcatgtaccacttgtaca 32599384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 36272837 - 36272793
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||    
T  36272837 tgatacatagaccaccttaggtggcatgtaccacttatacaccca 36272793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 36709367 - 36709323
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||    
T  36709367 tgatacatagaccatcttaggtggtatgtaccacttatacaccca 36709323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 40095269 - 40095309
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  40095269 tgatacatagaccaccttagatgacatgtaccacttgtaca 40095309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 23860340 - 23860302
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgta 253  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  23860340 tgatacatagaccaccttaggtggcatgtaccacttgta 23860302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 17823585 - 17823629
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  17823585 tgatacataaaccaccttagatggtatgtatcacttgtacaccca 17823629  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 8368545 - 8368503
Alignment:
Q  217 atacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  8368545 atacatagaccaccttaggtggcatgtaccacttgtacaccca 8368503  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 1993816 - 1993772
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||    
T  1993816 tgatacatagaccaccttaggtggcatgtatcacttgtacaccca 1993772  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 2599537 - 2599581
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||    
T  2599537 tgatacatagaccaccttaggtggcatgtaccacttatacaccca 2599581  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 14342365 - 14342321
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||    
T  14342365 tgatacatagaccaccttaggtggcatgtaccacttatacaccca 14342321  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 16465788 - 16465744
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||    
T  16465788 tgatacatagaccaccttagacggcatgtaccacttgtataccca 16465744  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 41075773 - 41075729
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| || |||||||||||||||||||||    
T  41075773 tgatacatagaccaccttaggtgacatgtaccacttgtacaccca 41075729  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 43066080 - 43066040
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  43066080 tgatacatagaccaccttaggtggcatgtaccacttgtaca 43066040  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 31774730 - 31774771
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacac 256  Q
    |||||||||||||| ||||| || ||||||||||||||||||    
T  31774730 tgatacatagaccaccttaggtgacatgtaccacttgtacac 31774771  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 44077642 - 44077675
Alignment:
Q  217 atacatagaccatcttagatggcatgtaccactt 250  Q
    ||||||||| ||||||||||||||||||||||||    
T  44077642 atacatagatcatcttagatggcatgtaccactt 44077675  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 4077137 - 4077093
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||| |||||||| ||||| |||||||||||||||||| |||||    
T  4077137 tgatatatagaccaccttaggtggcatgtaccacttgtataccca 4077093  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 10391481 - 10391437
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||||| |||||||| |||||||| |||||| ||||||||    
T  10391481 tgatacatagatcatcttaggtggcatgtgccacttatacaccca 10391437  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 11904859 - 11904903
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||| ||||| |||||| |||||||||||||||||    
T  11904859 tgatacataaaccaccttaggtggcatataccacttgtacaccca 11904903  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 28898001 - 28898045
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtacaccca 259  Q
    |||||||||||||| ||||| |||||| |||||||| ||||||||    
T  28898001 tgatacatagaccaccttaggtggcatataccacttatacaccca 28898045  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 31523688 - 31523648
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    ||||| ||||||||||||||||| |||||| ||||||||||    
T  31523688 tgatagatagaccatcttagatgacatgtatcacttgtaca 31523648  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 45413714 - 45413674
Alignment:
Q  215 tgatacatagaccatcttagatggcatgtaccacttgtaca 255  Q
    |||||||||||||| ||||| ||||||||||||||| ||||    
T  45413714 tgatacatagaccaccttaggtggcatgtaccacttataca 45413674  T

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Target: scaffold0933 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 3230 - 3185
Alignment:
Q  215 tgatacata-gaccatcttagatggcatgtaccacttgtacaccca 259  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||    
T  3230 tgatacataagaccatcttagatgacatgtaccatttgtacaccca 3185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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