View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20872_high_10 (Length: 290)
Name: NF20872_high_10
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20872_high_10 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 9883111 - 9883372
Alignment:
| Q |
16 |
catatttaatcaaagatacagaaaaatataagtcatcgtacaaacatcatcattatgcataagttaggaactaatgattcaatcaaagccaaaaataaaa |
115 |
Q |
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| T |
9883111 |
catatttaatcaaagatacagaaaaatataagtcatcgtacaaacatcatcattatgcataagttaggaactaatgattcaatcagagccaaaaataaaa |
9883210 |
T |
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| Q |
116 |
taggtaattacagtaatgaattagagtacgaacttggcatataatcatcaaaagaattaaagaaaccataaattaacaacccttaactgcccacatgagt |
215 |
Q |
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| T |
9883211 |
taggtaattacagtaatgaattagagtacgaacttggcttataatcatcaaaagaattaaagaaaccataaattaacaacccttaactacccacatgagt |
9883310 |
T |
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| Q |
216 |
aaacaatccttatgatggttctcgtcatatagataaataaatgaataaacaatttaaaacat |
277 |
Q |
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| T |
9883311 |
acacaatccttatgatggttctcgtcatatagataaataaatgaataaacaatttagaacat |
9883372 |
T |
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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 160392 - 160439
Alignment:
| Q |
185 |
aaattaacaacccttaactgcccacatgagtaaacaatccttatgatg |
232 |
Q |
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| T |
160392 |
aaattaacaacccttcactacccacatgagtaaacaacccttatgatg |
160439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 3387290 - 3387334
Alignment:
| Q |
188 |
ttaacaacccttaactgcccacatgagtaaacaatccttatgatg |
232 |
Q |
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| T |
3387290 |
ttaacaacccttcactacccacatgagtacacaacccttatgatg |
3387334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 15240063 - 15239988
Alignment:
| Q |
159 |
atcatcaaaagaattaaagaaac--cataaattaacaacccttaactgcccacatgagtaaacaatccttatgatg |
232 |
Q |
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| T |
15240063 |
atcatcaaaagaattaagaaaacaacagaaattaacaacccttcactacacacatgagcacacaacccttatgatg |
15239988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 46224457 - 46224421
Alignment:
| Q |
185 |
aaattaacaacccttaactgcccacatgagtaaacaa |
221 |
Q |
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| T |
46224457 |
aaattaacaacccttcactacccacatgagtaaacaa |
46224421 |
T |
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