View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20872_high_14 (Length: 257)

Name: NF20872_high_14
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20872_high_14
NF20872_high_14
[»] chr2 (11 HSPs)
chr2 (11-257)||(39372506-39372752)
chr2 (47-257)||(39225023-39225230)
chr2 (100-257)||(39204006-39204163)
chr2 (56-257)||(39385895-39386094)
chr2 (100-257)||(39163454-39163611)
chr2 (105-257)||(39180016-39180168)
chr2 (138-257)||(39395889-39396008)
chr2 (108-257)||(39217762-39217911)
chr2 (189-253)||(39492767-39492831)
chr2 (206-257)||(2363826-2363877)
chr2 (197-257)||(39379258-39379318)
[»] chr5 (1 HSPs)
chr5 (56-257)||(33563687-33563886)
[»] chr6 (1 HSPs)
chr6 (204-257)||(16115557-16115610)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 39372752 - 39372506
Alignment:
Q  11 cagagagccatgtactccaaataacttggtacaatggtagtgtactaagttagcaggtttgcattaccccatttctatacatattagtctgttccagtac 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372752 cagagagccatgtactccaaataacttggtacaatggtggtgtactaagttagcaggtttgcattaccccatttctatacatattagtctgttccagtac 39372653  T
Q  111 aaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372652 aaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcact 39372553  T
Q  211 gcagaacagttctcagactagcaatttcttgatctctggccttatcc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39372552 gcagaacagttctcagactagcaatttcttgatctctggccttatcc 39372506  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 257
Target Start/End: Complemental strand, 39225230 - 39225023
Alignment:
Q  47 gtagtgtactaagttagcaggtttgcattaccccatttctatacatattagtctgttccagtacaaaaactaatggcctttatgtgctttaagctcaaga 146  Q
    |||||||| ||||||||||||||| ||||||||||||| | |||||  |||  |||| |||  ||||||||||  ||||||||||||||| |||||||||    
T  39225230 gtagtgta-taagttagcaggtttccattaccccatttgtttacat--tagcttgtttcagcccaaaaactaacagcctttatgtgctttgagctcaaga 39225134  T
Q  147 atgcgatattgaatctccttatcaagcagatctgcagattgcaggttg-tgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatct 245  Q
    |||||||| |  |||||||||| ||||||| | |||||||  ||| || ||| || ||||||| ||||||||||| | ||||||||||||||||||||||    
T  39225133 atgcgatagtcgatctccttatgaagcagacccgcagattctaggctgctga-ccgaaatgcattgcagaacagtccccagactagcaatttcttgatct 39225035  T
Q  246 ctggccttatcc 257  Q
    ||||||||||||    
T  39225034 ctggccttatcc 39225023  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 39204006 - 39204163
Alignment:
Q  100 tgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatc 199  Q
    ||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| | | |||||  ||||||  |||    
T  39204006 tgttccagtccaataactaatagcctttatgtgcttttagctcaagaatgcgatattcaatctccttatgaagcagacccgtagattcaaggttgctatc 39204105  T
Q  200 caaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcc 257  Q
      ||||||| ||||||||||| |  |||||||||||||||| ||||||||||||||||    
T  39204106 agaaatgcattgcagaacagtcccaagactagcaatttcttcatctctggccttatcc 39204163  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 39385895 - 39386094
Alignment:
Q  56 taagttagcaggtttgcattaccccatttctatacatattagtctgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatat 155  Q
    |||||||||| |||| ||||||||||||||| | ||| | ||| ||||  ||||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  39385895 taagttagcacgtttccattaccccatttctttgcat-taagt-tgttttagtacaaaaactatttgcctttatgtgcttttagctcaagaatgcgatat 39385992  T
Q  156 tgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttat 255  Q
    | |||||| | |  |||||||||  ||  ||  || |||| |||| ||||||| || |||||||| | ||||||||||||||||||||||||||||||||    
T  39385993 tcaatctcataaagaagcagatcctcaacttctagtttgtaatccgaaatgcattgtagaacagtccccagactagcaatttcttgatctctggccttat 39386092  T

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Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 39163611 - 39163454
Alignment:
Q  100 tgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatc 199  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||  || ||||||| | | |||||  ||||||   ||    
T  39163611 tgttccagtccaaaaactaatagcctttatgtgcttttagctcaagaatgcgatattcaatatccgcatgaagcagacccgtagattcaaggttgctgtc 39163512  T
Q  200 caaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcc 257  Q
      ||||||| ||||||||||| |  |||||||||||||||| ||||||||||||||||    
T  39163511 agaaatgcattgcagaacagtcccaagactagcaatttcttcatctctggccttatcc 39163454  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 39180168 - 39180016
Alignment:
Q  105 cagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaa 204  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||| |||  || | | |||||  |||||||  ||  |||    
T  39180168 cagtccaaaaactaattgcctttatgtgcttttagctcaagaatgcgatagtcaatctccttatgaagttgacccgtagattcaaggttgttgtctgaaa 39180069  T
Q  205 tgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcc 257  Q
    |||| || |||||||| |  |||||||||||||||||||||||||||||||||    
T  39180068 tgcattgtagaacagtcccaagactagcaatttcttgatctctggccttatcc 39180016  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 39395889 - 39396008
Alignment:
Q  138 agctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcactgcagaacagttctcagactagcaattt 237  Q
    ||||||||||| |||||||||||||||||   |||||||||  | ||||  ||  |||  ||  ||||||| || |||||||||| ||||| ||||||||    
T  39395889 agctcaagaatacgatattgaatctccttgcgaagcagatcctctgattctagactgttctctgaaatgcattgtagaacagttcccagacaagcaattt 39395988  T
Q  238 cttgatctctggccttatcc 257  Q
    ||||||||||||||||||||    
T  39395989 cttgatctctggccttatcc 39396008  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 257
Target Start/End: Complemental strand, 39217911 - 39217762
Alignment:
Q  108 tacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgc 207  Q
    ||||||| ||||| |||||||||| |||| ||||||||||||||||| | ||| |||||   ||||||| |  ||||||  ||||||   ||| |||| |    
T  39217911 tacaaaacctaattgcctttatgtccttttagctcaagaatgcgatagtcaatttcctttataagcagaacctcagattctaggttgcattccgaaatac 39217812  T
Q  208 actgcagaacagttctcagactagcaatttcttgatctctggccttatcc 257  Q
    || ||||| |||| | || | ||||||||||||||||||| |||||||||    
T  39217811 acagcagagcagtccccaaattagcaatttcttgatctctagccttatcc 39217762  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 39492767 - 39492831
Alignment:
Q  189 aggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggcctt 253  Q
    ||||||| ||| | ||||||||| ||||||| | | |||||||||| ||||||||||||||||||    
T  39492767 aggttgttatctataatgcactgtagaacagctttgagactagcaacttcttgatctctggcctt 39492831  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 2363877 - 2363826
Alignment:
Q  206 gcactgcagaacagttctcagactagcaatttcttgatctctggccttatcc 257  Q
    |||||| |||||||||| |||||||||||||||||| ||| | |||||||||    
T  2363877 gcactgtagaacagttcccagactagcaatttcttggtcttttgccttatcc 2363826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 39379258 - 39379318
Alignment:
Q  197 atccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcc 257  Q
    |||| ||||||| ||  ||||||||  || ||||||||||||||||||||| |||||||||    
T  39379258 atccgaaatgcattgttgaacagtttccaaactagcaatttcttgatctctagccttatcc 39379318  T

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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 33563886 - 33563687
Alignment:
Q  56 taagttagcaggtttgcattaccccatttctatacatattagtctgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatat 155  Q
    |||||||||| ||||  |||||||||||||| |||||  |||  ||||||| | ||||||||||| ||||||||||| ||| ||| ||||||||||||      
T  33563886 taagttagcacgtttcgattaccccatttctttacat--taggttgttccactccaaaaactaattgcctttatgtgattttagcacaagaatgcgatgg 33563789  T
Q  156 tgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttat 255  Q
    | ||||||||||| ||||||||| |||||||  ||  |||  ||  ||||||| || | |||||| |  |||||||||||||||||||||||||||||||    
T  33563788 tcaatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttcttgatctctggccttat 33563689  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 16115610 - 16115557
Alignment:
Q  204 atgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcc 257  Q
    ||||| || |||||||||| ||||||||| |||||||||||||| |||||||||    
T  16115610 atgcattgtagaacagttcccagactagcgatttcttgatctctagccttatcc 16115557  T

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