View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20872_high_17 (Length: 250)

Name: NF20872_high_17
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20872_high_17
NF20872_high_17
[»] chr8 (1 HSPs)
chr8 (1-245)||(11382385-11382629)
[»] chr5 (3 HSPs)
chr5 (108-150)||(14932228-14932270)
chr5 (113-147)||(11684364-11684398)
chr5 (109-149)||(11615447-11615487)
[»] chr4 (4 HSPs)
chr4 (111-147)||(17125723-17125759)
chr4 (108-147)||(23503500-23503539)
chr4 (115-143)||(4662350-4662378)
chr4 (109-157)||(6364081-6364128)
[»] scaffold0103 (1 HSPs)
scaffold0103 (108-147)||(51509-51548)
[»] chr6 (3 HSPs)
chr6 (108-147)||(33911371-33911410)
chr6 (111-147)||(10452453-10452489)
chr6 (111-147)||(20370840-20370876)
[»] chr7 (2 HSPs)
chr7 (109-147)||(30496645-30496683)
chr7 (109-149)||(28178908-28178948)
[»] chr3 (2 HSPs)
chr3 (109-147)||(3757989-3758027)
chr3 (109-145)||(34318031-34318067)
[»] chr2 (4 HSPs)
chr2 (109-147)||(3102634-3102672)
chr2 (109-147)||(5045248-5045286)
chr2 (111-148)||(44216859-44216896)
chr2 (108-144)||(5998792-5998828)
[»] chr1 (1 HSPs)
chr1 (109-149)||(6933052-6933092)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 11382385 - 11382629
Alignment:
Q  1 caaacaccacctaaaactcacacacacaactgcgaaaactcggttcaaactagaatgacgatatttatcctagcaatatcggcattgtcagttgactagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  11382385 caaacaccacctaaaactcacacacacaactgcgaaaactcggttcaaactagaatgacgatattcatcctagcaatatcggcattgtcagttgactaga 11382484  T
Q  101 ccttacaaactttattttatattttgttataaaaatagattatacatgaagtgcttagttatattgtttatccaaacagtactagggtcagttactataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11382485 ccttacaaactttattttatattttgttataaaaatagattatacatgaagtgcttagttatattgtttatccaaacagtactagggtcagttactataa 11382584  T
Q  201 atcatatatcatatctacatcaaattattgaccatattcttggac 245  Q
    |||||||||||||||||||||||||||||||||||| | ||||||    
T  11382585 atcatatatcatatctacatcaaattattgaccataattttggac 11382629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 14932270 - 14932228
Alignment:
Q  108 aactttattttatattttgttataaaaatagattatacatgaa 150  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  14932270 aactttattttatcttttgctataaaaatagattatacatgaa 14932228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 11684398 - 11684364
Alignment:
Q  113 tattttatattttgttataaaaatagattatacat 147  Q
    |||||||||||||||||||||||||| ||||||||    
T  11684398 tattttatattttgttataaaaatagcttatacat 11684364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 11615487 - 11615447
Alignment:
Q  109 actttattttatattttgttataaaaatagattatacatga 149  Q
    |||||||||||| ||||||||||||||||| ||||| ||||    
T  11615487 actttattttatcttttgttataaaaatagcttatatatga 11615447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 17125723 - 17125759
Alignment:
Q  111 tttattttatattttgttataaaaatagattatacat 147  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17125723 tttattttatattttgttataaaaatagcttatacat 17125759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 23503539 - 23503500
Alignment:
Q  108 aactttattttatattttgttataaaaatagattatacat 147  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  23503539 aactttattttatattttgttatagaattagattatacat 23503500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 4662350 - 4662378
Alignment:
Q  115 ttttatattttgttataaaaatagattat 143  Q
    |||||||||||||||||||||||||||||    
T  4662350 ttttatattttgttataaaaatagattat 4662378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 6364128 - 6364081
Alignment:
Q  109 actttattttatattttgttataaaaatagattatacatgaagtgctta 157  Q
    |||||||||||| |||||||||| |||||| |||||||| |||||||||    
T  6364128 actttattttatcttttgttatagaaatagcttatacat-aagtgctta 6364081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 51548 - 51509
Alignment:
Q  108 aactttattttatattttgttataaaaatagattatacat 147  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  51548 aactttattttatattttgttataaaaataacttatacat 51509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 33911371 - 33911410
Alignment:
Q  108 aactttattttatattttgttataaaaatagattatacat 147  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  33911371 aactttatttgatcttttgttataaaaatagattatacat 33911410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 10452453 - 10452489
Alignment:
Q  111 tttattttatattttgttataaaaatagattatacat 147  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  10452453 tttattttatattttgttatagaaatagcttatacat 10452489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 20370876 - 20370840
Alignment:
Q  111 tttattttatattttgttataaaaatagattatacat 147  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  20370876 tttattttatcttttgttataaaaatagcttatacat 20370840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 30496683 - 30496645
Alignment:
Q  109 actttattttatattttgttataaaaatagattatacat 147  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  30496683 actttattttatattttgttatagaaatagtttatacat 30496645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 28178948 - 28178908
Alignment:
Q  109 actttattttatattttgttataaaaatagattatacatga 149  Q
    |||||||||||| |||||||||| |||||| ||||||||||    
T  28178948 actttattttatcttttgttatagaaatagcttatacatga 28178908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 3758027 - 3757989
Alignment:
Q  109 actttattttatattttgttataaaaatagattatacat 147  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  3758027 actttattttatattttgttacaaaaatagcttatacat 3757989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 34318067 - 34318031
Alignment:
Q  109 actttattttatattttgttataaaaatagattatac 145  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  34318067 actttattttatattttgttatagaaatagcttatac 34318031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 3102672 - 3102634
Alignment:
Q  109 actttattttatattttgttataaaaatagattatacat 147  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  3102672 actttattttatattttgctataaaaatagcttatacat 3102634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 5045248 - 5045286
Alignment:
Q  109 actttattttatattttgttataaaaatagattatacat 147  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  5045248 actttattttatcttttgttataaaaatagcttatacat 5045286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 44216896 - 44216859
Alignment:
Q  111 tttattttatattttgttataaaaatagattatacatg 148  Q
    |||||||||||||||||||||||||||  |||||||||    
T  44216896 tttattttatattttgttataaaaataacttatacatg 44216859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 5998792 - 5998828
Alignment:
Q  108 aactttattttatattttgttataaaaatagattata 144  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  5998792 aactttattttatcttttgttataaaaatagcttata 5998828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 6933052 - 6933092
Alignment:
Q  109 actttattttatattttgttataaaaatagattatacatga 149  Q
    |||||||||||| ||||||||||||||| | ||||||||||    
T  6933052 actttattttatgttttgttataaaaatggcttatacatga 6933092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University