View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20872_high_19 (Length: 215)

Name: NF20872_high_19
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20872_high_19
NF20872_high_19
[»] chr2 (22 HSPs)
chr2 (1-215)||(39372217-39372431)
chr2 (18-215)||(39379391-39379588)
chr2 (18-215)||(39217473-39217670)
chr2 (18-215)||(39179727-39179924)
chr2 (20-215)||(39224732-39224927)
chr2 (19-213)||(39386187-39386381)
chr2 (36-214)||(39396101-39396279)
chr2 (18-214)||(39163166-39163362)
chr2 (18-215)||(39204243-39204440)
chr2 (30-215)||(39425137-39425322)
chr2 (22-122)||(44894930-44895031)
chr2 (36-212)||(39159404-39159587)
chr2 (36-135)||(39492930-39493029)
chr2 (36-214)||(39145174-39145352)
chr2 (30-215)||(2363558-2363743)
chr2 (19-215)||(39125296-39125491)
chr2 (36-112)||(39209607-39209683)
chr2 (16-148)||(39132215-39132349)
chr2 (36-183)||(39188195-39188342)
chr2 (175-214)||(39419841-39419880)
chr2 (31-209)||(39469109-39469287)
chr2 (171-215)||(39471488-39471533)
[»] chr5 (2 HSPs)
chr5 (18-215)||(33563394-33563591)
chr5 (175-215)||(17061240-17061280)
[»] chr6 (1 HSPs)
chr6 (1-215)||(16115274-16115490)
[»] chr4 (2 HSPs)
chr4 (36-215)||(33153128-33153307)
chr4 (138-170)||(16439713-16439745)
[»] chr3 (1 HSPs)
chr3 (36-84)||(51577039-51577087)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 39372431 - 39372217
Alignment:
Q  1 tttcatacaatagaataaataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39372431 tttcatacaatagaataaataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgccctcacaaatcagtttggcattctggac 39372332  T
Q  101 gtgttcttgcaagagatcaactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372331 gtgttcttgcaagagatcaactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattc 39372232  T
Q  201 tcaacaaaatctgca 215  Q
    |||||||||||||||    
T  39372231 tcaacaaaatctgca 39372217  T

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Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 39379391 - 39379588
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||||| |||||||||||    
T  39379391 aataagaaaaacaaaagaaccttgatttcaatggagttggttttcttgcaactgttcgcacaaatcagtttggcattttggatgtgttgttgcaagagat 39379490  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||| ||||| ||||||  ||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  39379491 caacttgtttagtcttgtcagccaagttatatgcacaactgaatctaacagctacaacaaattgcttcctcttgataagattctcaacaaaatctgca 39379588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 39217670 - 39217473
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    |||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  39217670 aataagaaaaacagcagaaccttgatttcaatggagttgattttcttgcaactgctctcacaaatcagtttggcattctggacgaattctcgcaagagat 39217571  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||||||| ||| ||||  |||||||| |||||| || |||||||||||||| |||||||||| ||  ||||||||||||||| ||||||| |||||    
T  39217570 caactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaaacctgca 39217473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 39179924 - 39179727
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| | ||    
T  39179924 aataagaaaaacagaagaaccttgatttcaatggaattggttttcttgcaactgctttcacaaatcagtttgacattctggacgtgttctcgcaacatat 39179825  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||||  | || |||||   |||||||||||||| || |||||||||||||| |||||| |||||||||  | ||||||| || |||||||||||||    
T  39179824 caactaaatgatccttgtcatccaagttatatgcacaactgaatctaacagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgca 39179727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 39224927 - 39224732
Alignment:
Q  20 taagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatca 119  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||    
T  39224927 taagaaaaacagaagaaccttgatttcaatggagttggttttcttgcaactgctctcacaaataagtttggcattctggacatgttcttgcaacatatca 39224828  T
Q  120 actagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    |||| || || |||||  | ||||||||||||| || ||||   ||||||| |||||| |||||||||| | ||||||  || |||||||||||||    
T  39224827 actaattgatccttgtcagtcaagttatatgcacaactgaactgaacagcttcaacaatttgcttcctcatgataagacgcttaacaaaatctgca 39224732  T

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Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 39386187 - 39386381
Alignment:
Q  19 ataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatc 118  Q
    |||||||||  | ||| |||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||| ||||||| |||| | | |    
T  39386187 ataagaaaagaagaagaaccttgatttcaatggagttggttttcagacaactgctctcacaaatcagtctggcattctggatgtgttctcgcaacatacc 39386286  T
Q  119 aactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctg 213  Q
    ||||| |  |||||||| | |||||||||||||| || |||||||||||||| ||||||||||||||||| | ||||||| || |||||||||||    
T  39386287 aactaatcgattcttgtcgtccaagttatatgcacaactgaatctaacagcttcaacaaattgcttcctcttgataagatgcttaacaaaatctg 39386381  T

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Target: chr2; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 36 - 214
Target Start/End: Original strand, 39396101 - 39396279
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||| |  || ||| | ||    
T  39396101 accttgatttcaacggagttagttttcttgcagctgctctcacaaatcagtttggcattctggacgtgttctcgcaacatatcaattgattgattttcgt 39396200  T
Q  136 tggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgc 214  Q
      ||||||||||| ||| || |||||||||||||||||||||| ||||| ||||| |||||||| | ||||||||||||    
T  39396201 cagccaagttatacgcacaactgaatctaacagctacaacaaactgctttctcctgataagatttttaacaaaatctgc 39396279  T

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Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 39163362 - 39163166
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| | ||||| || | |||| | ||    
T  39163362 aataagaaaaacagaagaaccttgattccaatggagtttgatttcttgcaactgctctcacaaatcagtttggcatttttgacgtattttcgcaacatat 39163263  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgc 214  Q
    ||||||  | || |||||   |||||| ||||||| || ||||| |||||||| |||||  ||| |||||  | ||||||| |||||||||||||||    
T  39163262 caactaaatgatccttgtcatccaagtcatatgcaaaactgaatttaacagctgcaacagtttggttcctgttgataagatgctcaacaaaatctgc 39163166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 39204243 - 39204440
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||| |||| | || | ||    
T  39204243 aataagaaaaacagaagaaccttgatttcaatggagtttgatttcttgcaactgctctcacaaatcagtttggcatttttgacgtattctcgtaacatat 39204342  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||||  | || |||||   |||||| ||||||| || |||| ||||| ||  |||||| |||||||||  | ||||||  || |||||||||||||    
T  39204343 caactaaatgatccttgtcatccaagtcatatgcaaaactgaagctaactgcagcaacaatttgcttcctgttgataagaagcttaacaaaatctgca 39204440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 39425137 - 39425322
Alignment:
Q  30 aaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttat 129  Q
    ||||| ||||| ||||| ||||||||||||||| ||||| | |||||| |||||||||| |||||||| || |||||| ||||||||||||||| || ||    
T  39425137 aaaagaaccttaatttcgatggagttggttttcatgcaagtactctcagaaatcagttttgcattctgcacatgttctcgcaagagatcaactaattgat 39425236  T
Q  130 tcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    | ||||||  ||||||| ||||| || |||||  ||||||| ||||| |||| |  ||| |  | ||||| |||||||||||||||    
T  39425237 tattgttgctcaagttaaatgcacaactgaatgaaacagcttcaacatattgttctctctttctcagattatcaacaaaatctgca 39425322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 44894930 - 44895031
Alignment:
Q  22 agaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctct-cacaaatcagtttggcattctggacgtgttcttgcaagagatcaa 120  Q
    ||||||||||||| ||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  44894930 agaaaaacaaaagaaccttgatttcaacggagtcggtttccatgcaagtgctcttcacaaatcagtttggcattctggacgtgtttctgcaagagatcaa 44895029  T
Q  121 ct 122  Q
    ||    
T  44895030 ct 44895031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 39159587 - 39159404
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat-------caactagttta 128  Q
    |||||||||||||| ||||| |||||||  |||||||| ||||||||| |||| |||||||||| ||||||| |||| | ||       ||| ||||| |    
T  39159587 accttgatttcaattgagttagttttctcacaactgctatcacaaatccgtttcgcattctggatgtgttctcgcaacatattacatatcaattagttaa 39159488  T
Q  129 ttcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatct 212  Q
    |||||||  ||||||||||||||| || |||||||||||||| ||  |  |||||||||| |||||||||| | ||||||||||    
T  39159487 ttcttgtaagccaagttatatgcacaactgaatctaacagcttcagtagtttgcttcctcataataagatttttaacaaaatct 39159404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 39492930 - 39493029
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||| ||||||||||||||||||| ||||||| |||||||| |||| |||||   |||||| || |||||||  |||||||||||||||| ||| ||||    
T  39492930 accttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaactagttgattattgt 39493029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 39145352 - 39145174
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||| |||||||||||||||| || |||||||||||||||| | || |  ||   |||||| || |||||||| |||| ||||||||| | | | ||||    
T  39145352 accttaatttcaatggagttggcttccttgcaactgctctcaaagattaaatttagattctgcacatgttcttgaaagatatcaactagctgagtattgt 39145253  T
Q  136 tggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgc 214  Q
    ||   |||||||||||| || |||||||||||||| || || ||||||  ||| | |||||| |||  |||||||||||    
T  39145252 tgctgaagttatatgcacaactgaatctaacagcttcatcatattgctgtctcttgataagactctgtacaaaatctgc 39145174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 2363743 - 2363558
Alignment:
Q  30 aaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttat 129  Q
    ||||| ||||||||||| ||||||||||||  ||||||||||||||||  ||||  | | |||||||| || |||||  |||| ||| |||||  || ||    
T  2363743 aaaagaaccttgatttctatggagttggttgccttgcaactgctctcattaatcgatcttgcattctgcacatgttcccgcaatagaccaactgattgat 2363644  T
Q  130 tcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||  ||||   |||||||||  | ||||||||||||||  ||| | |||||| | || | |||||||||| |||||||||||||    
T  2363643 tcttagtggctgtgttatatgcgcagatgaatctaacagcctcaatatattgctgcttcatgataagattctgaacaaaatctgca 2363558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 39125491 - 39125296
Alignment:
Q  19 ataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatc 118  Q
    |||||||||| | ||| || || |||||||| |||| ||||| ||||||| |||||||| |||| |||||   ||| || || |||||||  ||||||||    
T  39125491 ataagaaaaaaataagaactttaatttcaatagagtcggtttccttgcaattgctctcagaaattagttttagatt-tgcacatgttcttcaaagagatc 39125393  T
Q  119 aactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    | |||||| ||| | ||||   ||||||||||||  | |||||||||||||| || || ||||||  ||| | ||||||||||| |||||| |||||    
T  39125392 agctagttgattatcgttgctgaagttatatgcacgactgaatctaacagcttcatcatattgctgtctcttgataagattctcgacaaaaactgca 39125296  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 39209607 - 39209683
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaa 112  Q
    |||||||||||||| ||||| |||||||  |||||||| ||||||||| |||| |||||||||| ||||||| ||||    
T  39209607 accttgatttcaattgagttagttttctcacaactgctatcacaaatccgtttcgcattctggatgtgttctcgcaa 39209683  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 39132349 - 39132215
Alignment:
Q  16 taaataagaaaaacaaa--agtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaag 113  Q
    |||||||||||||||||  ||   |||||||||||  ||||| |||||| || ||||||||||| |  ||||||| ||||| ||  |||||| | |||||    
T  39132349 taaataagaaaaacaaacaagagtcttgatttcaaatgagtttgttttcatggaactgctctcagagttcagttttgcattatgtgcgtgttatcgcaag 39132250  T
Q  114 agatcaactagtttattcttgttggccaagttata 148  Q
    ||| | | |||||||||||||| ||||||||||||    
T  39132249 agagcgaatagtttattcttgtaggccaagttata 39132215  T

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Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 39188195 - 39188342
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||| |||||||||||||||| || |||||||||||||||| | || |  ||   |||||| || |||||||| |||| ||||||||| | | | ||||    
T  39188195 accttaatttcaatggagttggcttccttgcaactgctctcaaagattaaatttagattctgcacatgttcttgaaagatatcaactagctgagtattgt 39188294  T
Q  136 tggccaagttatatgcagaaatgaatctaacagctacaacaaattgct 183  Q
    ||   |||||||||||| || |||||||||||||| || || ||||||    
T  39188295 tgctgaagttatatgcacaactgaatctaacagcttcatcatattgct 39188342  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 39419841 - 39419880
Alignment:
Q  175 caaattgcttcctcctaataagattctcaacaaaatctgc 214  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  39419841 caaattgcttcctccttataagattctcaacaaaatctgc 39419880  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 39469287 - 39469109
Alignment:
Q  31 aaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttatt 130  Q
    |||| ||||| ||||||||||||||||||  ||||||| |||||||| |||| |||||   |||||| || || ||||  || ||||||||||||| |||    
T  39469287 aaagaaccttaatttcaatggagttggttcccttgcaaatgctctcagaaattagttttagattctgcacatgctcttcgaatagatcaactagttgatt 39469188  T
Q  131 cttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaa 209  Q
      |||||   |||||||| |||  | | |||||||||||| || || |||  |  ||| | ||||||||||||||||||    
T  39469187 actgttgctgaagttatacgcatgactaaatctaacagcttcatcatattcttgtctcttgataagattctcaacaaaa 39469109  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 39471488 - 39471533
Alignment:
Q  171 acaacaaattgcttcctcctaataag-attctcaacaaaatctgca 215  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||    
T  39471488 acaacaaattgcttcttcctaataagttttctcaacaaaatctgca 39471533  T

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Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 33563591 - 33563394
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||| | ||    
T  33563591 aataagaaaaacggaagaaccttgatttcaatggagttggttttcttgcaaaagctctcacaaatcagtttggcattctggacgtgctctcgcaacatat 33563492  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||||  | || ||  |   |||||| ||| ||| || |||||||||||||| |||||| |||||||||  | ||||||| || |||||||||||||    
T  33563491 caactaactgatcctcatcatccaagtcatacgcacaactgaatctaacagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgca 33563394  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 17061280 - 17061240
Alignment:
Q  175 caaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  17061280 caaattccttcctcttgataagattctcaacaaaatctgca 17061240  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 16115490 - 16115274
Alignment:
Q  1 tttcatacaatagaat--aaataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctgg 98  Q
    ||||||| ||||||||  |||| | ||||| | ||| |||||||||||||| ||||| |||||||  |||| ||||  ||||||||||||  ||||||||    
T  16115490 tttcataaaatagaattcaaatgaaaaaaatataagaaccttgatttcaattgagttagttttctcacaacggctcgtacaaatcagtttcacattctgg 16115391  T
Q  99 acgtgttcttgcaagagatcaactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagat 198  Q
    ||||||||| |||| | ||||| || ||  |||||||  ||||||||||||||| |  |||||||||||||| ||||||||||||| ||||| |||||||    
T  16115390 acgtgttctcgcaacatatcaattaattggttcttgtcagccaagttatatgcacagctgaatctaacagcttcaacaaattgctttctcctgataagat 16115291  T
Q  199 tctcaacaaaatctgca 215  Q
      | |||||||||||||    
T  16115290 atttaacaaaatctgca 16115274  T

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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 36 - 215
Target Start/End: Complemental strand, 33153307 - 33153128
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||| |||||||||||||||||| |||||||  |||||||| || ||| ||| ||| |||| || ||||| |||||||||||||||  || ||||||||    
T  33153307 acctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcactctgcacatgttcctgcaagagatcaactgattgattcttgt 33153208  T
Q  136 tggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    |||||| |||||| ||| | ||||||||||||||| ||| |  ||||||| |||  |||||||||| |||||||||||||    
T  33153207 tggccacgttataagcacatatgaatctaacagcttcaatatgttgcttcttccggataagattctgaacaaaatctgca 33153128  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 16439745 - 16439713
Alignment:
Q  138 gccaagttatatgcagaaatgaatctaacagct 170  Q
    ||||| |||||||||||||||||||||||||||    
T  16439745 gccaaattatatgcagaaatgaatctaacagct 16439713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 51577087 - 51577039
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatca 84  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  51577087 accttgatttcaatggagttggttttcttgcagttgctctcagaaatca 51577039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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