View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20872_high_8 (Length: 317)

Name: NF20872_high_8
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20872_high_8
NF20872_high_8
[»] chr8 (4 HSPs)
chr8 (22-304)||(18395327-18395624)
chr8 (22-175)||(11462578-11462731)
chr8 (179-223)||(8629217-8629261)
chr8 (168-220)||(34849211-34849263)
[»] chr6 (3 HSPs)
chr6 (172-223)||(33080493-33080544)
chr6 (171-215)||(4163265-4163309)
chr6 (171-215)||(4224886-4224930)
[»] chr7 (1 HSPs)
chr7 (188-225)||(7513661-7513698)
[»] chr5 (2 HSPs)
chr5 (178-223)||(10771809-10771854)
chr5 (171-215)||(11700274-11700318)
[»] chr1 (1 HSPs)
chr1 (187-220)||(3110098-3110131)
[»] scaffold0004 (1 HSPs)
scaffold0004 (187-223)||(98580-98616)
[»] chr3 (1 HSPs)
chr3 (187-223)||(27795943-27795979)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 18395624 - 18395327
Alignment:
Q  22 cacagattacaaccagtgccatttaaaaatacaattgctgtattctcagttaataaaacgatatctcttcagcgacactacctgtaata----------- 110  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||               
T  18395624 cacagattacaaccagtgccatttgaaaatacaattgctgtattctcagttaataaaatgatatatcttcagcgacactacctgtaatatatttaaacat 18395525  T
Q  111 ----attataaggataaaactcagacgcaatgctatagaatttgttactgctgttctctactaaaggcatgtttggatatgcttatttgagcttaactag 206  Q
        ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  18395524 aataattataaggataaaactcagacgcaatgctatagaatttgtcactgctgttctctactaaaggcctgtttggatatgcatatttgagcttaactag 18395425  T
Q  207 tggcataagcacttgtgttagaagtgcttatgccagagttgtgagactctttgggagaatttatgagaacatactatgtcatgttcataagctctata 304  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  18395424 tggcataagcacttgtgttagaagtgcttatgctagagttgtgagactctgtggaagaatttatgagaacatactatgtcatgttcataagctctata 18395327  T

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Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 11462578 - 11462731
Alignment:
Q  22 cacagattacaaccagtgccatttaaaaatacaattgctgtattctcagttaataaaacgatatctcttcagcgacactacctgtaataattataaggat 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11462578 cacagattacaaccagtgccatttgaaaatacaattgctgtattctcagttaataaaatgatatctcttcagcgacactacctgtaataattataaggat 11462677  T
Q  122 aaaactcagacgcaatgctatagaatttgttactgctgttctctactaaaggca 175  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11462678 aaaactcagacacaatgctatagaatttgttactgctgttctctactaaaggca 11462731  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 8629261 - 8629217
Alignment:
Q  179 ttggatatgcttatttgagcttaactagtggcataagcacttgtg 223  Q
    |||||| ||||||||| |||||| ||| |||||||||||||||||    
T  8629261 ttggatttgcttatttaagcttacctactggcataagcacttgtg 8629217  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 34849263 - 34849211
Alignment:
Q  168 taaaggcatgtttggatatgcttatttgagcttaactagtggcataagcactt 220  Q
    |||||||||||| ||||  ||||||||||||||| ||| ||||||||| ||||    
T  34849263 taaaggcatgttcggattagcttatttgagcttagctactggcataagtactt 34849211  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 33080493 - 33080544
Alignment:
Q  172 ggcatgtttggatatgcttatttgagcttaactagtggcataagcacttgtg 223  Q
    |||||||||||||| |||||||||||||||  || |||||||||||||||||    
T  33080493 ggcatgtttggataggcttatttgagcttatttactggcataagcacttgtg 33080544  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 4163309 - 4163265
Alignment:
Q  171 aggcatgtttggatatgcttatttgagcttaactagtggcataag 215  Q
    ||||||||||||||  ||||||||||||||| ||| |||||||||    
T  4163309 aggcatgtttggattggcttatttgagcttatctactggcataag 4163265  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 4224930 - 4224886
Alignment:
Q  171 aggcatgtttggatatgcttatttgagcttaactagtggcataag 215  Q
    ||||||||||||||  ||||||||||||||| ||| |||||||||    
T  4224930 aggcatgtttggattggcttatttgagcttatctactggcataag 4224886  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 7513698 - 7513661
Alignment:
Q  188 cttatttgagcttaactagtggcataagcacttgtgtt 225  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  7513698 cttatttgagcttatctactggcataagcacttgtgtt 7513661  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 10771809 - 10771854
Alignment:
Q  178 tttggatatgcttatttgagcttaactagtggcataagcacttgtg 223  Q
    |||||||  ||||||||||||||| ||| |||||||||||||||||    
T  10771809 tttggattggcttatttgagcttatctactggcataagcacttgtg 10771854  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 11700318 - 11700274
Alignment:
Q  171 aggcatgtttggatatgcttatttgagcttaactagtggcataag 215  Q
    |||||||||||||| |||||||||||||||| | | |||||||||    
T  11700318 aggcatgtttggatttgcttatttgagcttatccactggcataag 11700274  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 3110131 - 3110098
Alignment:
Q  187 gcttatttgagcttaactagtggcataagcactt 220  Q
    |||||||||||||||||||||| |||||||||||    
T  3110131 gcttatttgagcttaactagtgacataagcactt 3110098  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 98580 - 98616
Alignment:
Q  187 gcttatttgagcttaactagtggcataagcacttgtg 223  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  98580 gcttatttgagcttatctaatggcataagcacttgtg 98616  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 27795943 - 27795979
Alignment:
Q  187 gcttatttgagcttaactagtggcataagcacttgtg 223  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  27795943 gcttatttgagcttatctactggcataagcacttgtg 27795979  T

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