View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20872_low_1 (Length: 636)
Name: NF20872_low_1
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20872_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 13 - 620
Target Start/End: Complemental strand, 1197354 - 1196747
Alignment:
| Q |
13 |
aatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaact |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197354 |
aatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaact |
1197255 |
T |
|
| Q |
113 |
catcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197254 |
catcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaac |
1197155 |
T |
|
| Q |
213 |
atcatcaaacaacaatggttctgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcat |
312 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197154 |
atcatcaaacaacaatggttctgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcat |
1197055 |
T |
|
| Q |
313 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197054 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
1196955 |
T |
|
| Q |
413 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttcttt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196954 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttcttt |
1196855 |
T |
|
| Q |
513 |
agaaaatcaacttgcttgttctcatcatcctcaaagtccattgtgtagataaatataataattaatattattggatgttgcaaatttttatccatcttat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196854 |
agaaaatcaacttgcttgttctcatcatcctcaaagtccattgtgtagataaatataataattaatattattggatgttgcaaatttttatccatcttat |
1196755 |
T |
|
| Q |
613 |
tttccttt |
620 |
Q |
| |
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|||||||| |
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| T |
1196754 |
tttccttt |
1196747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 610
Target Start/End: Original strand, 7289231 - 7289824
Alignment:
| Q |
16 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaactcat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| | |||||||| ||||| || |
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| T |
7289231 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttagacttcaacaaatcctta-gaaatgaaaaaaaatagaaaacttat |
7289329 |
T |
|
| Q |
116 |
caaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatc |
215 |
Q |
| |
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| ||| | | ||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
7289330 |
-acaaattaaa-ccaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaagaacactttctctatctgaacgtgaaggaggaataacatc |
7289427 |
T |
|
| Q |
216 |
atcaaacaacaatggttctgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcatacca---actgaatatttgggtcat |
312 |
Q |
| |
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|||||| |||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
7289428 |
atcaaagaacaatggttatgtcctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgtgtcat |
7289527 |
T |
|
| Q |
313 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |
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| T |
7289528 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttgagtgta |
7289627 |
T |
|
| Q |
413 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttcttt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
7289628 |
ttttgaagatggttgaagatcatggaaagaataagga-tagtgttcaaa-caagaatgtagatcaattggcattgaagaaatgatgagttattgttcttt |
7289725 |
T |
|
| Q |
513 |
agaaaatcaacttgcttgttctcatcatcctcaaagtccattgtgtagataaatataataatt-aatattattggatgttgcaaatttttatccatctt |
610 |
Q |
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||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
7289726 |
agaaaattaactcgtttgttctcatcatcctcaaagtccattgtgtagataaatataataattaaaaattattggatgttgcaaatttttatccatctt |
7289824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 430
Target Start/End: Original strand, 50471139 - 50471318
Alignment:
| Q |
251 |
tagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaaga |
350 |
Q |
| |
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|||| ||||||||||| | ||| ||||| ||||| | |||||||| || ||||||| ||||||||| ||||| || | | ||||||||||||||||| |
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| T |
50471139 |
tagccgtttgtgttggtgtagaccttaacaggtttgttataccaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaaga |
50471238 |
T |
|
| Q |
351 |
atttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaag |
430 |
Q |
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|||||||||| ||||| ||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
50471239 |
atttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaag |
50471318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 50470930 - 50470991
Alignment:
| Q |
39 |
aaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaa |
100 |
Q |
| |
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||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50470930 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatccttaagaaatggagaa |
50470991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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