View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20872_low_11 (Length: 276)
Name: NF20872_low_11
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20872_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 26355158 - 26355412
Alignment:
| Q |
3 |
acacatatcaaagggattaattgtataattgcaagaagtataaacaaaatattttttatagtaactatttagtatggttaccaaaatatacttagtgctg |
102 |
Q |
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| T |
26355158 |
acacatattaaagggattaattgtataattgcaagaattataaacaaaatattttttatagtaactatttagtatggttaccaaaatatacttagtgctg |
26355257 |
T |
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| Q |
103 |
ggggatttcagtttttggttatatattctagttaatgcatgctgattataactagtgttggattgttctatataggtagtggttttgcaaatggaatcat |
202 |
Q |
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| T |
26355258 |
ggggatttcagtttttggttaaatattctagttaatgcatgctgattataactagtgttggattgttctatataggtagtggttttgcaaatggaatcat |
26355357 |
T |
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| Q |
203 |
tgatctaggtggacttcaagtgtcacaagtatcaacatttaacaaagtttgggcc |
257 |
Q |
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| T |
26355358 |
tgatctaggtggacttcaagtgtcacaagtatcaacatttaacaaagtttgggcc |
26355412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 28316377 - 28316296
Alignment:
| Q |
173 |
tataggtagtggttttgcaaatggaatcattgatctaggtggacttcaagtgtcacaagtatcaacatttaacaaagtttgg |
254 |
Q |
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| T |
28316377 |
tataggtggtggatttggtaatggaatcattgatctaggtgaactaaaagtgtcacaaatatcaacattcaacaaaatttgg |
28316296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 807002 - 807067
Alignment:
| Q |
139 |
gcatgctgattataactagtgttggattgttctatataggtagtggttttgcaaatggaatcattg |
204 |
Q |
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| T |
807002 |
gcatgctgattataactagtgttggattgttacatataggtagtggttttgcaaattgaattattg |
807067 |
T |
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